Interface to the 'OpenGWAS' Database API
Look up allele frequencies and LD scores for 1000 genomes populations ...
Retrieve a allele frequency and LD scores for pre-defined lists of var...
Look up allele frequencies and LD scores for 1000 genomes populations ...
Wrapper for sending queries and payloads to API
OpenGWAS server status
Query specific variants from specific GWAS
Extract batch name from study ID
Get list of data batches in IEU OpenGWAS database
Check if authentication has been made
Check if OpenGWAS allowance needs to be reset
Check datasets that are in process of being uploaded
Look up sample sizes when meta data is missing from associations
Retrieve OpenGWAS JSON Web Token from .Renviron file
Parse out json response from httr object
Get list of download URLs for each file associated with a dataset thro...
Get list of studies with available GWAS summary statistics through API
ieugwasr: Interface to the 'OpenGWAS' Database API
Infer ancestry of GWAS dataset by matching against 1000 genomes allele...
Perform clumping on the chosen variants using through API
Wrapper for clump function using local plink binary and ld reference d...
Perform LD clumping on SNP data
Get LD matrix using local plink binary and reference dataset
Get LD matrix for list of SNPs
Check which rsids are present in a remote LD reference panel
Convert current IDs to legacy IDs
Details of how access token logs are used
Perform fast phewas of a specific variants against all available GWAS ...
Print API status
Print GWAS information
Toggle API address between development and release
Set the reset time for OpenGWAS allowance
Obtain top hits from a GWAS dataset
Get user details
Obtain information about chr pos and surrounding region
Obtain variants around a gene
Obtain information about rsid
Convert mixed array of rsid and chrpos to list of rsid
Interface to the 'OpenGWAS' database API <https://api.opengwas.io/api/>. Includes a wrapper to make generic calls to the API, plus convenience functions for specific queries.
Useful links