Imputation for Proteomics
Estimation of lower and upper bounds for missing values.
Estimation of a mixture model of MCAR and MNAR values in each column o...
Function similar to the function `apply(X,dim,function(x)sum(is.na(x))...
Function similar to the function `apply(X,dim,function(x)sum(!is.na(x)...
Function similar to the function apply(X,dim,sd,na.rm=TRUE).
Function similar to the function apply(X,dim,sum,na.rm=TRUE).
Function to compute similarity measures between a vector and each row ...
Function allowing to create a vector indicating the membership of each...
Introduction to the IMP4P package
Imputing missing values by assuming that the distribution of complete ...
Imputation of data sets containing peptide intensities with a multiple...
Imputation using a decision rule under an assumption of a mixture of M...
Imputing missing values using a maximum likelihood estimation (MLE).
Imputation of peptides having no value in a biological condition (pres...
Imputing missing values using Principal Components Analysis.
Imputation of peptides with a random value.
Imputing missing values using Random Forest.
Imputing missing values using an adaptation of the LSimpute algorithm ...
Multiple imputation from a matrix of probabilities of being MCAR for e...
Estimating the MCAR mechanism in a sample.
Estimating the missing data mechanism in a sample.
Estimating the proportion of MCAR values in biological conditions usin...
Estimating the proportion of MCAR values in a sample using a logit mod...
Estimating the proportion of MCAR values in a sample using a probit mo...
Estimation of a vector of probabilities that missing values are MCAR.
Estimation of a matrix of probabilities that missing values are MCAR.
Simulation of data sets by controlling the proportion of MCAR values a...
Function to generated values following a translated Beta distribution
Functions to analyse missing value mechanisms and to impute data sets in the context of bottom-up MS-based proteomics.