inbreedR0.3.3 package

Analysing Inbreeding Based on Genetic Markers

check_data

Checks the data for consistency with the inbreedR working format.

convert_raw

Genotype format converter

g2_microsats

Estimating g2 from microsatellite data

g2_snps

Estimating g2 from larger datasets, such as SNPs

HHC

Calculates heterzygosity-heterozygosity correlations with standardized...

inbreedR

inbreedR: Workflows for analysing variance in inbreeding and HFCs base...

MLH

Calculate multilocus heterozygosity (MLH)

plot.inbreed

Plot an inbreed object

print.inbreed

Print an inbreed object

r2_hf

Expected r2 between standardized multilocus heterozygosity (h) and inb...

r2_Wf

Expected r2 between inbreeding level (f) and fitness (W)

simulate_g2

Simulate g2g2

simulate_r2_hf

Calculates the expected squared correlation between heteorzygosity and...

sMLH

Calculate multilocus heterozygosity (MLH)

Download source packageRead PDF manual

A framework for analysing inbreeding and heterozygosity-fitness correlations (HFCs) based on microsatellite and SNP markers.

  • Maintainer: Martin A. Stoffel
  • License: GPL-2
  • Last published: 2022-02-02