Compute, Handle and Plot Incidence of Dated Events
Access various elements of an incidence object
Coerce to an incidence object
Coerce to a tibble
Convert incident object to a data frame
Coerce to a data.table
Bootstrap incidence time series
Complete dates for all group combinations
Compute cumulative 'incidence'
Estimate the peak date of an incidence curve
Compute the incidence of events (tidyselect compatible)
Compute the incidence of events
Functions now defunct in package incidence2
incidence2: Compute, Handle and Plot Incidence of Dated Events
Keep first, last and peak occurences
Create, modify, and delete incidence2 columns
Nest rows into a list-column of data frames
Color palettes used in incidence
Plot an incidence object
Objects exported from other packages
Regroup 'incidence' objects (tidyselect compatible)
Regroup 'incidence' objects
Divide an incidence2 object in to it's implicit groupings
Summarise each grouping down to one row
Summary of an incidence object
Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence2' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis (<https://www.reconverse.org>).
Useful links