Helper Functions for 'Interactive Tree Of Life'
Learn from tree
Color distance
Complex HTML text
Convert 0/1 data to connection pairs
Convert character data to 0/1
Convert range to node id
correct_get_color
Correct type parameter
head line
Create itol.unit Object from object
The itol.hub Class
The itol.theme Class
The itol.unit Class
Learn object data from file
Learn object data from files
Learn object data from units
Learn object data from unit
Learn data from template file
Learn align
Learn alignment
Learn bar
Learn basic plot
Learn basic theme
Learn binary
Learn border
Learn common themes
Learn connection
Learn domain
Learn externalshape
Learn heatmap
Learn image
Merge units
plus method add method for S4 class itol.hub and itol.unit
Search tree file
show method for S4 class itol.hub
Sort colors
Train inbuilt theme
Paste rows
Calculate tree based on count matrix
Create itol.hub Object
Create itol.theme Object
Create itol.unit
Merge two data frame
Data frame tree
Transpose a data.table using the first column as new header
Read fasta file
Write fasta file
Get file dir
Get file name
Create itol.unit Object from file
get_color
Generate gradient colors
Learn field
Learn legend
Learn paramter
Learn profile
Learn separator
Learn sub data frame
Learn label
Learn linechart
Learn piechart
Learn specific themes
Learn strip label
Learn template type
Filter out comments and empty lines
Split lines into two parts
Calculate longest continuous match between input and target strings
Extract theme from inbuilt_themes
Vector tree
Write all data object into files
Write raw data into files
Write unit object into file
The 'Interactive Tree Of Life' <https://itol.embl.de/> online server can edit and annotate trees interactively. The 'itol.toolkit' package can support all types of annotation templates.