Extracting and Visualizing Output from 'jagsUI'
Caterpillar plot
By-chain kernel density of each column of a data.frame.
By-chain kernel densities of jagsUI object
Simple by-chain kernel density plot
Quick summary of n.eff values by parameter name
Quick summary of Rhat values by parameter name
Compare Caterpillar Plots
Compare Density
Compare Priors
Correlation matrix from a JAGS object
Bivariate Plot of Posterior Densities
Envelope plot
Expit, or inverse logit
Extract data.frame
Plist
Functions for Extracting and Visualizing Output from 'jagsUI'
Automated K-fold or Leave One Out Cross Validation
Logit
Number of parameter nodes by parameter name
Number of parameters
Overlay envelope plots
Pairs trace plot
Diagnostic plots from posterior predictive distribution
Plot a correlation matrix from a JAGS object
Plot kernel densities of single parameter nodes
Plotting all Rhat values
Subset from posterior data.frame
Quantile-quantile plot from posterior predictive distribution
Random Colors
Skeleton
Trace plot of each column of a data.frame.
Trace plot of jagsUI object
Simple trace plot
Combination of trace plots and by-chain kernel densities of jagsUI o...
Trace plots corresponding to the worst values of Rhat
Time series plot of centered posterior predictive distribution
Tools are provided to streamline Bayesian analyses in 'JAGS' using the 'jagsUI' package. Included are functions for extracting output in simpler format, functions for streamlining assessment of convergence, and functions for producing summary plots of output. Also included is a function that provides a simple template for running 'JAGS' from 'R'. Referenced materials can be found at <DOI:10.1214/ss/1177011136>.