Just Analysis Methods Base
Adjust axis label margins
set R color alpha value
Apply CL color range
Add categorical colors to 'Excel' 'xlsx' worksheets
Xlsx Conditional formatting
convert date DDmmmYYYY to Date
convert numeric value or R object to human-readable size
Calculate more detailed density of numeric values
break a vector into groups
Safely call a function using ellipsis
ComplexHeatmap cell function to label heatmap cells
Lightweight method to check if an R package is installed
check lightMode for light background color
get R color alpha value
convert R color to HCL color matrix
convert R color to HSL color matrix
Convert R color to HSV matrix
convert column number to 'Excel' column name
Make dithered color pattern light-dark
Make a color gradient
Process coordinate adjustment presets
paste a list into a delimited vector
convert date to age in days
Decide plot panel rows, columns for graphics::par(mfrow)
Convert degrees to radians
Draw text labels on a base R plot
exponentiate log2 values with directionality
Fill blank entries in a vector
Fix yellow color
Fix yellow color hue
Format an integer as a string
Get axis label for minorLogTicks
get color ramp by name, color, or function
get simple date string
Get aspect ratio for coordinates, plot, or device
Search for objects in the environment
Draw grouped axis labels
Global substitution into ordered factor
Pattern replacement with multiple patterns
Handle function arguments as text
convert HCL to R color
Apply head() across each element in a list of vectors
Return Heatmap column order from ComplexHeatmap heatmap object
Return Heatmap row order from ComplexHeatmap heatmap object
convert HCL to R color
Convert HSV matrix to R color
case-insensitive grep
vector contains any case-insensitive grep match
case-insensitive logical grepl
Display color raster image using a matrix of colors
Display a color raster image
detect valid R color
Vectorized isFALSE
Vectorized isTRUE
Jam-specific recursive apply
jamba: Jam Base Methods
Calculate scatter plot point density
Show R function arguments jam-style
Extend kableExtra colorization of 'Rmarkdown' tables
Convert list of vectors to data.frame with item, value, name
Long listing of R session objects
log2 transformation with directionality
vectorized make_styles for html span output
vectorized make_styles for crayon output
make R colors darker (or lighter)
make unique vector names
Merge list of data.frames retaining all rows
Return the middle portion of data similar to head and tail
Calculate major and minor tick marks for log-scale axis
Display major and minor tick marks for log-scale axis
order alphanumeric values keeping numeric values in proper order
sort alphanumeric values keeping numeric values in proper order
sort data.frame keeping numeric values in proper order
sort alphanumeric values within a list format
order alphanumeric values from a list
assign unique names for a vector
define a named vector using vector names
Return the newest file from a vector of files
Apply noise floor and ceiling to numeric vector
Scale a numeric vector from 0 to 1
Create a blank plot with optional labels
prefix integers with leading zeros
pad a character string to a fixed length
Paste data.frame rows into character vector
Paste data.frame rows into an ordered factor
Plot distribution and histogram overlay
Plot ridges density plots for numeric matrix input
Smooth scatter plot with enhancements
print colorized output to R console
provigrep: progressive case-insensitive value-grep
Convert radians to degrees
Simple rainbow palette replacement
rbind a list of vectors into matrix or data.frame
Import one or more data.frame from 'Excel' 'xlsx' format
relist a vector which allows re-ordered names
Reload 'Rmarkdown' cache
Rename columns in a data.frame, matrix, tibble, or GRanges object
Convert RGB color matrix to R color
lengths for recursive lists
remove Infinite values
remove NA values
remove NA values from list elements
remove NULL entries from list
Calculate row group means, or other statistics
Remove outlier points per row by MAD factor threshold
return the classes of a list of objects
print dimensions of list object elements
Set column widths in Xlsx files
Set row heights in Xlsx files
Get Chroma and Luminance ranges for the given lightMode
set R prompt with project name and R version
Define visible text color
Get and set options for shadowText
Draw text with shadow border
Show colors from a vector or list
convert size to numeric value
Smooth scatter plot, Jam style
Determine square root axis tick mark positions
frequency of entries, ordered by frequency
Uppercase the first letter in each word
Remove alpha transparency from colors
case-insensitive grep, returning unmatched indices
apply unique to each element of a list
Un-nest a nested list into a simple list
case-insensitive grep, returning unmatched values
Draw colored box indicating R plot space
grep, returning values
case-insensitive grep, returning values
Warp a vector of numeric values relative to zero
Warp colors in a color ramp
Export a data.frame to 'Excel' 'xlsx' format
Just analysis methods ('jam') base functions focused on bioinformatics. Version- and gene-centric alphanumeric sort, unique name and version assignment, colorized console and 'HTML' output, color ramp and palette manipulation, 'Rmarkdown' cache import, styled 'Excel' worksheet import and export, interpolated raster output from smooth scatter and image plots, list to delimited vector, efficient list tools.