kergp0.5.8 package

Gaussian Process Laboratory

as.list.covTP

Coerce a covTP Object into a List

checkGrad

Check the Gradient Provided in a covMan Object

checkPar

Check Length and Names of a Vector of Values for Parameters or Bounds

checkX-methods

Check the Compatibility of a Design with a Given Covariance Object

checkX

Generic function: Check the Compatibility of a Design Matrix with a Gi...

coef-methods

Extract Coefficients of a Covariance Kernel Object as Vector, List or ...

coefLower

Extract or Set Lower/Upper Bounds on Coefficients

coefReplace

Generic Function: Replacement of Coefficient Values

contr.helmod

Modified Helmert Contrast Matrix

corLevCompSymm

Correlation Matrix for the Compound Symmetry Structure

corLevDiag

Correlation or Covariance Matrix for a Diagonal Structure

corLevLowRank

Correlation Matrix for a Low-Rank Structure

corLevSymm

Correlation Matrix for a General Symmetric Correlation Structure

covAll-class

Virtual Class "covAll"

covANOVA-class

Class "covANOVA"

covANOVA

Creator for the Class "covANOVA"

covComp-class

Class "covComp"

covComp

Creator for the Class "covComp" for Composite Covariance Kernels

covMan-class

Class "covMan"

covMan

Creator Function for covMan Objects

covMat-methods

Covariance Matrix for a Covariance Kernel Object

covMat

Generic Function: Covariance or Cross-Covariance Matrix Between two Se...

covOrd-class

Class "covOrd"

covOrd

Warping-Based Covariance for an Ordinal Input

covQual-class

Class "covQual"

covQualNested-class

Class "covQualNested"

covQualNested

Nested Qualitative Covariance

covRadial-class

Class "covRadial"

covRadial

Creator for the Class "covRadial"

covTP-class

Class "covTP"

covTP

Creator for the Class "covTP"

covTS-class

Class "covTS"

covTS

Creator Function for covTS Objects

gls-methods

Generalized Least Squares Estimation with a Given Covariance Kernel

gls

Generic Function: Generalized Least Squares Estimation with a Given Co...

gp

Gaussian Process Model

hasGrad

Generic Function: Extract slot hasGrad of a Covariance Kernel

influence.gp

Diagnostics for a Gaussian Process Model, Based on Leave-One-Out

inputNames

Generic Function: Names of the Inputs of a Covariance Kernel

k1Funs

One-Dimensional Classical Covariance Kernel Functions

k1Kerns

Predefined covMan Objects for 1D Kernels

kergp-package

Gaussian Process Laboratory

kernelName

Name of the One-Dimensional Kernel in a Composite Kernel Object

kGauss

Gauss (Squared-Exponential) Kernel

kMatern

Matérn Kernels

MLE-methods

Maximum Likelihood Estimation of Gaussian Process Model Parameters

MLE

Generic Function: Maximum Likelihood Estimation of a Gaussian Process ...

npar-methods

Number of Parameters for a Covariance Kernel Object

npar

Generic function: Number of Free Parameters in a Covariance Kernel

optimMethods

Optimization Methods (or Algorithms) for the mleMethod

parMap-methods

Map the Parameters of a Structure on the Inputs and Kernel Parameters

parMap

Generic Function: Map the Parameters of a Composite Covariance Kernel

parNamesSymm

Vector of Names for the General 'Symm' Parameterisation

parseCovFormula

Parse a Formula or Expression Describing a Composite Covariance Kernel

plot.covQual

Plot for a qualitative input

plot.gp

Diagnostic Plot for the Validation of a gp Object

plot.simulate

Plot Simulations from a gp Object

predict.gp

Prediction Method for the "gp" S3 Class

prinKrige

Principal Kriging Functions

q1CompSymm

Qualitative Correlation or Covariance Kernel with one Input and Compou...

q1Diag

Qualitative Correlation or Covariance Kernel with one Input and Diagon...

q1LowRank

Qualitative Correlation or Covariance Kernel with one Input and Low-Ra...

q1Symm

Qualitative Correlation or Covariance Kernel with one Input and Genera...

scores

Generic Function: Scores for a Covariance Kernel Object

shapeSlot

Extracts the Slots of a Structure

simulate.covAll

Simulation of a covAll Object

simulate.gp

Simulation of Paths from a gp Object

simulPar-covAll-method

Draw Random Values for the Parameters of a Covariance Kernel

simulPar

Generic function: Draw Random Values for the Parameters of a Covarianc...

symIndices

Vector of Indices Useful for Symmetric or Anti-Symmetric Matrices.

translude

Make Translucent colors

varVec-methods

Covariance Matrix for a Covariance Kernel Object

varVec

Generic Function: Variance of Gaussian Process at Specific Locations

warpFuns

Warpings for Ordinal Inputs

Gaussian process regression with an emphasis on kernels. Quantitative and qualitative inputs are accepted. Some pre-defined kernels are available, such as radial or tensor-sum for quantitative inputs, and compound symmetry, low rank, group kernel for qualitative inputs. The user can define new kernels and composite kernels through a formula mechanism. Useful methods include parameter estimation by maximum likelihood, simulation, prediction and leave-one-out validation.

  • Maintainer: Olivier Roustant
  • License: GPL-3
  • Last published: 2024-11-19