Log-Gaussian Cox Process
fftgrid function
fftinterpolate.fromFunction function
fftinterpolate.fromSPDF function
interpolate.fromXYZ function
fftinterpolate function
fftmultiply function
formulaList function
GAfinalise.MonteCarloAverage function
GAfinalise.nullAverage function
GAfinalise function
GAinitialise.MonteCarloAverage function
GAinitialise.nullAverage function
GAinitialise function
GammafromY function
GAreturnvalue.MonteCarloAverage function
GAreturnvalue.nullAverage function##'
GAreturnvalue function
GAupdate.MonteCarloAverage function
GAupdate.nullAverage function
GAupdate function
GaussianPrior function
gDisjoint_wg function
genFFTgrid function
getCellCounts function
getCounts function
getCovParameters.GPrealisation function
getCovParameters.list function
getCovParameters function
getinterp function
getlgcpPredictSpatialINLA function
getLHSformulaList function
spatialAtRisk.fromXYZ function
add.list function
addTemporalCovariates function
affine.fromFunction function
affine.fromSPDF function
affine.fromXYZ function
affine.SpatialPolygonsDataFrame function
affine.stppp function
aggCovInfo.ArealWeightedMean function
aggCovInfo.ArealWeightedSum function
aggCovInfo.Majority function
aggCovInfo function
aggregateCovariateInfo function
aggregateformulaList function
andrieuthomsh function
as.array.lgcpgrid function
as.fromXYZ.fromFunction function
as.fromXYZ function
as.im.fromFunction function
as.im.fromSPDF function
as.im.fromXYZ function
as.list.lgcpgrid function
as.owin.stapp function
as.owinlist function
as.owinlist.SpatialPolygonsDataFrame function
as.owinlist.stapp function
as.ppp.mstppp function
as.ppp.stppp function
as.SpatialGridDataFrame.fromXYZ function
as.SpatialGridDataFrame function
as.SpatialPixelsDataFrame.lgcpgrid function
as.SpatialPixelsDataFrame function
as.stppp function
as.stppp.stapp function
assigninterp function
at function
autocorr function
autocorrMultitype function
BetaParameters function
betavals function
blockcircbase function
blockcircbaseFunction function
bt.scalar function
checkObsWin function
chooseCellwidth function
circulant.matrix function
circulant.numeric function
circulant function
clearinterp function
computeGradtruncSpatial function
computeGradtruncSpatioTemporal function
condProbs function
constanth function
constantInTime.numeric function
constantInTime function
constantInTime.stppp function
cov.interp.fft function
CovarianceFct function
covEffects function
CovFunction.function function
CovFunction function
CovParameters function
Cvb function
d.func function
density.stppp function
discreteWindow.lgcpPredict function
discreteWindow function
.onAttach function
dump2dir function
eigenfrombase function
etavals function
EvaluatePrior function
exceedProbs function
exceedProbsAggregated function
expectation.lgcpPredict function
expectation.lgcpPredictSpatialOnlyPlusParameters function
expectation function
exponentialCovFct function
extendspatialAtRisk function
extract.lgcpPredict function
Extract.mstppp function
extract function
Extract.stppp function
getpolyol function
getRotation.default function
getRotation function
getRotation.stppp function
getup function
getZmat function
getZmats function
GFfinalise.dump2dir function
GFfinalise.nullFunction function
GFfinalise function
GFinitialise.dump2dir function
GFinitialise.nullFunction function
GFinitialise function
GFreturnvalue.dump2dir function
GFreturnvalue.nullFunction function
GFreturnvalue function
GFupdate.dump2dir function
GFupdate.nullFunction function
GFupdate function
ginhomAverage function
gIntersects_pg function
gOverlay function
GPdrv function
GPdrv2 function
GPdrv2_Multitype function
GPlist2array function
GPrealisation function
grid2spdf function
grid2spix function
grid2spoly function
grid2spts function
gridav.lgcpPredict function
gridav function
gridfun.lgcpPredict function
gridfun function
gridInWindow function
gTouches_wg function
gu function
guessinterp function
hasNext.iter function
generic hasNext method
hvals.lgcpPredict function
hvals function
identify.lgcpPredict function
identifygrid function
image.lgcpgrid function
initaliseAMCMC.andrieuthomsh function
initaliseAMCMC.constanth function
initialiseAMCMC function
integerise.mstppp function
integerise function
integerise.stppp function
intens.lgcpPredict function
intens.lgcpSimMultitypeSpatialPlusParameters function
intens.lgcpSimSpatialPlusParameters function
intens function
interptypes function
inversebase function
is this a burn-in iteration?
is.pow2 function
do we retain this iteration?
is.SPD function
iteration number
KinhomAverage function
lambdaEst.ppp function
lambdaEst function
lambdaEst.stppp function
lgcp
lgcpbayes function
lgcpForecast function
lgcpgrid.array function
lgcpgrid.list function
lgcpgrid.matrix function
lgcpgrid function
lgcpInits function
lgcppars function
lgcpPredict function
lgcpPredictAggregated function
lgcpPredictAggregateSpatialPlusPars function
lgcpPredictMultitypeSpatialPlusPars function
lgcpPredictSpatial function
lgcpPredictSpatialINLA function
lgcpPredictSpatialPlusPars function
lgcpPredictSpatioTemporalPlusPars function
lgcpPrior function
lgcpSim function
lgcpSimMultitypeSpatialCovariates function
lgcpSimSpatial function
lgcpSimSpatialCovariates function
lgcpvignette function
loc2poly function
LogGaussianPrior function
loop over an iterator
ltar function
MALAlgcp function
MALAlgcpAggregateSpatial.PlusPars function
MALAlgcpMultitypeSpatial.PlusPars function
MALAlgcpSpatial.PlusPars function
MALAlgcpSpatial function
MALAlgcpSpatioTemporal.PlusPars function
matchcovariance function
maternCovFct15 function
maternCovFct25 function
iterator for MCMC loops
mcmcpars function
null progress monitor
printing progress monitor
text bar progress monitor
graphical progress monitor
mcmctrace.lgcpPredict function
mcmctrace function
meanfield.lgcpPredict function
meanfield.lgcpPredictINLA function
meanfield function
MonteCarloAverage function
mstppp.list function
mstppp.ppp function
mstppp function
mstppp.stppp function
muEst function
multiply.list function
neattable function
neigh2D function
next step of an MCMC chain
nullAverage function
nullFunction function
numCases function
osppp2latlon function
osppp2merc function
paramprec function
paramprecbase function
parautocorr function
parsummary function
plot.fromSPDF function
plot.fromXYZ function
plot.lgcpAutocorr function
plot.lgcpgrid function
plot.lgcpPredict function
plot.lgcpQuantiles function
plot.lgcpZmat function
plot.mcmcdiag function
plot.mstppp function
plot.stppp function
plot.temporalAtRisk function
plotExceed.array function
plotExceed.lgcpPredict function
plotExceed function
plotit function
postcov.lgcpPredictAggregateSpatialPlusParameters function
postcov.lgcpPredictMultitypeSpatialPlusParameters function
postcov.lgcpPredictSpatialOnlyPlusParameters function
postcov.lgcpPredictSpatioTemporalPlusParameters function
postcov function
print.dump2dir function
print.fromFunction function
print.fromSPDF function
print.fromXYZ function
print.gridaverage function
print.lgcpgrid function
print.lgcpPredict function
print.mcmc function
print.mstppp function
print.stapp function
print.stppp function
print.temporalAtRisk function
priorpost function
PriorSpec.list function
PriorSpec function
quantile.lgcpgrid function
quantile.lgcpPredict function
RandomFieldsCovFct function
raster.lgcpgrid function
rescale.mstppp function
rescale.stppp function
reset iterator
rgauss function
roteffgain function
rotmat function
rr.lgcpPredict function
rr function
samplePosterior function
segProbs function
seintens.lgcpPredict function
seintens function
selectObsWindow.default function
selectObsWindow function
selectObsWindow.stppp function
serr.lgcpPredict function
serr function
setoutput function
set the progress bar
showGrid.default function
showGrid.lgcpPredict function
showGrid function
showGrid.stppp function
smultiply.list function
sparsebase function
spatialAtRisk.bivden function
spatialAtRisk.default function
spatialAtRisk.function function
spatialAtRisk.im function
spatialAtRisk.lgcpgrid function
spatialAtRisk function
spatialAtRisk.SpatialGridDataFrame function
spatialAtRisk.SpatialPolygonsDataFrame function
spatialIntensities.fromSPDF function
spatialIntensities.fromXYZ function
spatialIntensities function
spatialparsEst function
SpatialPolygonsDataFrame.stapp function
SpikedExponentialCovFct function
stapp.list function
stapp function
stapp.SpatialPolygonsDataFrame function
stGPrealisation function
stppp.list function
stppp.ppp function
stppp function
summary.lgcpgrid function
summary.mcmc function
target.and.grad.AggregateSpatialPlusPars function
target.and.grad.MultitypespatialPlusPars function
target.and.grad.spatial function
target.and.grad.spatialPlusPars function
target.and.grad.spatiotemporal function
target.and.grad.SpatioTemporalPlusPars function
temporalAtRisk.function function
temporalAtRisk.numeric function
temporalAtRisk function
tempRaster function
textsummary function
thetaEst function
toral.cov.mat function
touchingowin function
traceplots function
transblack function
transblue function
transgreen function
transred function
A text progress bar with label
updateAMCMC.andrieuthomsh function
updateAMCMC.constanth function
updateAMCMC function
varfield.lgcpPredict function
varfield.lgcpPredictINLA function
varfield function
window.lgcpPredict function
xvals.default function
xvals.fromXYZ function
xvals.lgcpPredict function
xvals function
xvals.SpatialGridDataFrame function
YfromGamma function
yvals.default function
yvals.fromXYZ function
yvals.lgcpPredict function
yvals function
yvals.SpatialGridDataFrame function
zvals.default function
zvals.fromXYZ function
zvals function
zvals.SpatialGridDataFrame function
Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process. Bayesian inference for spatial, spatiotemporal, multivariate and aggregated point processes using Markov chain Monte Carlo. See Benjamin M. Taylor, Tilman M. Davies, Barry S. Rowlingson, Peter J. Diggle (2015) <doi:10.18637/jss.v063.i07>.