Breeding-Related Mixed-Effects Models
Additive relationship matrix
add.diallel.vars
Adjusting fixed effects for intercept
Letter to number converter
Balance a dataset
Function for creating B-spline basis functions (Eilers & Marx, 2010)
Build a hybrid marker matrix using parental genotypes from inbred indi...
Filling gaps for a dataset to balance
Build the mixed model equations from a lmebreed object
Identity relationship matrix
Imputing a numeric or character vector
Legendre polynomial matrix
L inear m ixed e quations 4 B reeding
Relationship-based mixed-effects model fits
Fit breeding-related mixed-effects models
Overlay Matrix
Reduced Model Matrix
reduced rank matrix
Image of sparsity between two variables
Shortcut to sparse matrix image
sparse model matrix
Get Tensor Product Spline Mixed Model Incidence Matrices
Rotation matrix UDU' decomposition
Fit relationship-based and customized mixed-effects models with complex variance-covariance structures using the 'lme4' machinery. The core computational algorithms are implemented using the 'Eigen' 'C++' library for numerical linear algebra and 'RcppEigen' 'glue'.