Package for Sequence Analysis by Local Score
Automatic analysis
Convert a character sequence into a score sequence
Convert several character sequences into score sequences
Daudin [p-value] [iid]
Exact method for p-value [Markov chains]
Karlin [p-value] [iid]
Monte Carlo - Karlin [p-value]
Lindley process
Loads matrix from csv-File
Load score from file
localScore: Package for Sequence Analysis by Local Score
Local score
Functions parameters global description
Maximum of the partial sum [probability] [iid]
MCC [p-value] [iid]
Monte Carlo method [p-value]
Probability that the height of the first excursion is ...
Probability that the height of the ith excursion (sequ...
theoretical probability of reaching the threshold score a on the i-th ...
Convert a real scores vector into an integer scores vector
Calculate the record times of a sequence
Empirical distribution from sequences
Transition matrix from sequence(s)
Stationary distribution [Markov chains]
Sampling function for Markov chains
Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).