mapmixture1.2.0 package

Spatial Visualisation of Admixture on a Projected Map

add_pie_charts

Create Pie Charts

build_pie_chart

Build Pie Chart

calc_default_bbox

Calculate Default Bounding Box

launch_mapmixture

Launch Shiny App

mapmixture

Plot Pie Charts on Map

merge_coords_data

Merge coordinates and admixture data

read_input_data

Read Input Data

scatter_plot

PCA or DAPC Scatter Plot

standardise_data

Standardise Input Data

structure_plot

STRUCTURE Barplot

transform_admix_data

Transform Admixture Data

transform_bbox

Transform Bounding Box Coordinates

transform_df_coords

Transform Coordinates in Data Frame

Download source packageRead PDF manual

Visualise admixture as pie charts on a projected map, admixture as traditional structure barplots or facet barplots, and scatter plots from genotype principal components analysis. A 'shiny' app allows users to create admixture maps interactively. Jenkins TL (2024) <doi:10.1111/1755-0998.13943>.

  • Maintainer: Tom Jenkins
  • License: GPL (>= 3)
  • Last published: 2025-01-23

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