Model Comparison Using 'babette'
Interpret a Bayes factor
Get testing marg_liks
Calculate the weights for each marginal likelihood
Can 'mcbette' run?
Checks if the BEAST2 'NS' package is installed.
Check if the marg_liks are of the same type as returned by est_marg_...
Check if the mcbette_state is valid.
Documentation of general function arguments. This function does nothin...
Estimate the marginal likelihood for an inference model.
Estimate the marginal likelihoods for one or more inference models
Get the current state of mcbette
Interpret the marginal likelihood estimates
Determine if the marg_liks is valid
Create a mcbette report, to be used when reporting bugs
Performs a minimal mcbette run
mcbette: Model Comparison Using Babette
Plot the marg_liks
Set the mcbette state.
'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'mcbette' allows to do a Bayesian model comparison over some site and clock models, using 'babette' (<https://github.com/ropensci/babette/>).