mcr1.3.3.1 package

Method Comparison Regression

calcDiff

Calculate difference between two numeric vectors that gives exactly ze...

compareFit

Graphical Comparison of Regression Parameters and Associated Confidenc...

includeLegend

Include Legend

mc.analytical.ci

Analytical Confidence Interval

mc.bootstrap

Resampling estimation of regression parameters and standard errors.

mc.calc.bca

Bias Corrected and Accelerated Resampling Confidence Interval

mc.calc.quant

Quantile Calculation for BCa

mc.calc.quantile

Quantile Method for Calculation of Resampling Confidence Intervals

mc.calc.Student

Student Method for Calculation of Resampling Confidence Intervals

mc.calc.tboot

Bootstrap-t Method for Calculation of Resampling Confidence Intervals

mc.calcAngleMat.R

Calculate Matrix of All Pair-wise Slope Angles

mc.calcAngleMat

Calculate Matrix of All Pair-wise Slope Angles

mc.calcLinnetCI

Jackknife Confidence Interval

mc.calcTstar

Compute Resampling T-statistic.

mc.deming

Calculate Unweighted Deming Regression and Estimate Standard Errors

mc.linreg

Calculate ordinary linear Regression and Estimate Standard Errors

mc.make.CIframe

Returns Results of Calculations in Matrix Form

mc.paba.LargeData

Passing-Bablok Regression for Large Datasets

mc.paba

Passing-Bablok Regression

mc.PBequi

Equivariant Passing-Bablok Regression

mc.wdemingConstCV

Calculate Weighted Deming Regression

mc.wlinreg

Calculate Weighted Ordinary Linear Regression and Estimate Standard Er...

mcr-package

Method Comparison Regression

mcreg

Comparison of Two Measurement Methods Using Regression Analysis

MCResult-class

Class "MCResult"

MCResult.calcBias

Systematical Bias Between Reference Method and Test Method

MCResult.calcCUSUM

Calculate CUSUM Statistics According to Passing & Bablok (1983)

MCResult.calcResponse

Calculate Response with Confidence Interval.

MCResult.getCoefficients

Get Regression Coefficients

MCResult.getData

Get Data

MCResult.getErrorRatio

Get Error Ratio

MCResult.getFitted

Get Fitted Values.

MCResult.getRegmethod

Get Regression Method

MCResult.getResiduals

Get Regression Residuals

MCResult.getWeights

Get Weights of Data Points

MCResult.initialize

MCResult Object Initialization

MCResult.plot

Scatter Plot Method X vs. Method Y

MCResult.plotBias

Plot Estimated Systematical Bias with Confidence Bounds

MCResult.plotDifference

Bland-Altman Plot

MCResult.plotResiduals

Plot Residuals of an MCResult Object

MCResult.printSummary

Print Summary of a Regression Analysis

MCResultAnalytical-class

Class "MCResultAnalytical"

MCResultAnalytical.calcResponse

Caluculate Response

MCResultAnalytical.initialize

Initialize Method for 'MCResultAnalytical' Objects.

MCResultAnalytical.printSummary

Print Regression-Analysis Summary for Objects of class 'MCResultAnalyt...

MCResultBCa-class

Class "MCResultBCa"

MCResultBCa.bootstrapSummary

Compute Bootstrap-Summary for 'MCResultBCa' Objects.

MCResultBCa.calcResponse

Caluculate Response

MCResultBCa.initialize

Initialize Method for 'MCResultBCa' Objects.

MCResultBCa.plotBootstrapCoefficients

Plot distriblution of bootstrap coefficients

MCResultBCa.plotBootstrapT

Plot distriblution of bootstrap pivot T

MCResultBCa.printSummary

Print Regression-Analysis Summary for Objects of class 'MCResultBCa'.

MCResultJackknife-class

Class "MCResultJackknife"

MCResultJackknife.calcResponse

Caluculate Response

MCResultJackknife.getJackknifeIntercept

Get-Method for Jackknife-Intercept Value.

MCResultJackknife.getJackknifeSlope

Get-Method for Jackknife-Slope Value.

MCResultJackknife.getJackknifeStatistics

Jackknife Statistics

MCResultJackknife.getRJIF

Relative Jackknife Influence Function

MCResultJackknife.initialize

Initialize Method for 'MCResultJackknife' Objects.

MCResultJackknife.plotwithRJIF

Plotting the Relative Jackknife Influence Function

MCResultJackknife.printSummary

Print Regression-Analysis Summary for Objects of class 'MCResultJackkn...

MCResultResampling-class

Class "MCResultResampling"

MCResultResampling.bootstrapSummary

Compute Bootstrap-Summary for 'MCResultResampling' Objects.

MCResultResampling.calcResponse

Caluculate Response

MCResultResampling.initialize

Initialize Method for 'MCResultAnalytical' Objects.

MCResultResampling.plotBootstrapCoefficients

Plot distriblution of bootstrap coefficients

MCResultResampling.plotBootstrapT

Plot distriblution of bootstrap pivot T

MCResultResampling.printSummary

Print Regression-Analysis Summary for Objects of class 'MCResultResamp...

newMCResult

MCResult Object Constructor with Matrix in Wide Format as Input

newMCResultAnalytical

MCResultAnalytical object constructor with matrix in wide format as in...

newMCResultBCa

MCResultBCa object constructor with matrix in wide format as input.

newMCResultJackknife

MCResultJackknife Object Constructor with Matrix in Wide Format as Inp...

newMCResultResampling

MCResultResampling object constructor with matrix in wide format as in...

Regression methods to quantify the relation between two measurement methods are provided by this package. In particular it addresses regression problems with errors in both variables and without repeated measurements. It implements the CLSI recommendations (see J. A. Budd et al. (2018, <https://clsi.org/standards/products/method-evaluation/documents/ep09/>) for analytical method comparison and bias estimation using patient samples. Furthermore, algorithms for Theil-Sen and equivariant Passing-Bablok estimators are implemented, see F. Dufey (2020, <doi:10.1515/ijb-2019-0157>) and J. Raymaekers and F. Dufey (2022, <arXiv:2202:08060>). A comprehensive overview over the implemented methods and references can be found in the manual pages "mcr-package" and "mcreg".

  • Maintainer: Sergej Potapov
  • License: GPL (>= 3)
  • Last published: 2024-09-23