medfate4.8.4 package

Mediterranean Forest Simulation

aspwb

Simulation in agricultural areas

biophysics

Physical and biophysical utility functions

carbon

Carbon-related functions

communication

Internal communication

defaultControl

Control parameters for simulation models

defaultManagementFunction

Default forest management actions

defaultSoilParams

Default soil parameters

droughtStress

Drought stress indicators

emptyforest

Creation of an empty forest

evaluation

Evaluation of simulations results

extract

Extracts model outputs

fire_behaviour

Fire behaviour functions

fire_severity

Fire severity functions

fireHazard

Fire hazard

fordyn

Forest dynamics

forest_mapWoodyTables

Map forest plot data

forest_simplification

Forest complexity reduction

forest

Description of a forest stand.

forest2aboveground

Input for simulation models (deprecated)

fuel_properties

Fuel stratification and fuel characteristics

fuel_windAdjustmentFactor

Wind adjustment factor for Rothermel's model

growth

Forest growth

herb_values

Herbaceous description functions

hydraulics_conductancefunctions

Hydraulic confuctance functions

hydraulics_defoliation

Hydraulic-related defoliation

hydraulics_scalingconductance

Scaling from conductivity to conductance

hydraulics_supplyfunctions

Hydraulic supply functions

hydrology_infiltration

Soil infiltration

hydrology_interception

Rainfall interception

hydrology_soilEvaporation

Bare soil evaporation and herbaceous transpiration

hydrology_soilWaterBalance

Soil water balance

hydrology_verticalInputs

Water vertical inputs

light_advanced

Advanced radiation transfer functions

light_basic

Radiation extinction functions used in basic transpiration sub-model

medfate-package

medfate: Mediterranean Forest Simulation

modelInput

Input for simulation models

modifyParams

Modify parameters

moisture

Tissue moisture functions

mortality_dailyProbability

Mortality

optimization

Multiple model runs and function factories for optimization routines

pheno_updateLeaves

Leaf phenology

photo

Photosynthesis submodel functions

plant_values

Woody plant cohort description functions

plot.forest

Plot forest attributes

plot.spwb_day

Plots simulation results for one day

plot.spwb

Plots simulation results

regeneration

Plant regeneration

resetInputs

Reset simulation inputs

resistances

Soil-plant resistances

root

Root functions

shinyplot

Shiny app with interactive plots

soil_redefineLayers

Redefine soil layer widths

soil_retentionCurvePlot

Soil water retention and conductivity plots

soil_texture

Soil texture and hydraulics

soil_thermodynamics

Soil thermodynamic functions

soil

Soil initialization

species_values

Species description functions

SpParams

Data tables with species parameter definitions and values

spwb_day

Single-day simulation

spwb

Soil-plant water balance

stand_values

Stand values

summary.forest

Summary of forest structure

summary.spwb

Summarize simulation results

sureau_ecos

Sureau-ECOS inner functions for testing only

TaxonTraitMeans

Parameter average values

transp_maximumTranspirationModel

Maximum transpiration vs. LAI

transp_modes

Transpiration modes

transp_stomatalregulation

Stomatal regulation

tree2forest

Single-cohort forests

utils_ldrOptimization

Optimization of root distribution

utils_rockOptimization

Optimization of rock fragment content

vprofile_leafAreaDensity

Vertical profiles

waterUseEfficiency

Water use efficiency

wind

Models for canopy turbulence

woodformation

Wood formation

Simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>; De Caceres et al. (2021) <doi:10.1016/j.agrformet.2020.108233>].

  • Maintainer: Miquel De Cáceres
  • License: GPL (>= 2) | LGPL (>= 3)
  • Last published: 2025-10-21