Handling and Representing Trophic Networks in Space and Time
append aggregated networks
compute and attach metanetwork layouts
Build metanetwork object
compute trophic levels
plot difference network
extract networks from a metanetwork object
ggmetanet
Default configuration for ggnet
Default configuration for group-TL-tsne layout
Test of belonging to class metanetwork
Build and execute 'metanetwork' pipeline
Execute 'metanetwork' pipeline
Pipe
Plot trophic groups hierarchy
print metanetwork
Default configuration for the diffusion kernel based t-sne
vismetaNetwork
Default configuration for visNetwork
A toolbox to handle and represent trophic networks in space or time across aggregation levels. This package contains a layout algorithm specifically designed for trophic networks, using dimension reduction on a diffusion graph kernel and trophic levels. Importantly, this package provides a layout method applicable for large trophic networks.
Useful links