Metaproteomics Post-Processing Analysis
add_kegg
add_taxonomy
crumble_taxonomy
export_ipath3
export_robject
export_vennlists
filter_shared
filter_text
filter_unshared
getsc_specific
identify_differences
inspect_sample_elements
load_protspeps
plot_dendocluster
plot_fulltaxo
plot_intensities
plot_intensities_ratio
plot_pca
plot_pietaxo
plot_stackedtaxo
plot_venn
remove_element
select_element
Set of tools for descriptive analysis of metaproteomics data generated from high-throughput mass spectrometry instruments. These tools allow to cluster peptides and proteins abundance, expressed as spectral counts, and to manipulate them in groups of metaproteins. This information can be represented using multiple visualization functions to portray the global metaproteome landscape and to differentiate samples or conditions, in terms of abundance of metaproteins, taxonomic levels and/or functional annotation. The provided tools allow to implement flexible analytical pipelines that can be easily applied to studies interested in metaproteomics analysis.