getValues function

get system quantity (e.g. startValue, inflowRate, washOut) for all state variables (convention is that microbes are before resources)

getValues(
  sysInfoMicrobes,
  sysInfoRes,
  stateVarNames,
  quantity,
  strainNames,
  microbeNames,
  resourceNames,
  numStrains
)

Arguments

• sysInfoMicrobes: sys info dataframe for microbes
• sysInfoRes: sys info dataframe for resources
• stateVarNames: Vector of names of all the state variables
• quantity: String. Name of quantity to get value for e.g. 'startValue'
• strainNames: Vector of strings of strain names
• microbeNames: Vector of strings which contains the names of the microbial groups in the system e.g. c('Bacteroides','Acetogens')
• resourceNames: Vector of strings which contains the names of the resources in the system
• numStrains: Integer. Number of strains per group