networkDFfromMPoutput() R function from [microPop]

networkDFfromMPoutput

make node and edge data frames from microPop output to use in visNetwork


networkDFfromMPoutput(
  chosen.time,
  MPoutput,
  groupNames = NULL,
  sumOverPaths = TRUE,
  sumOverStrains = TRUE,
  convertToMoles = TRUE
)

chosen.time: the time you want to plot
MPoutput: the output from microPopModel()
groupNames: Default is NULL which plots all the microbes. To plot a subset of all the groups, specify a vector of strings of the names of the groups you want to plot.
sumOverPaths: Logical. Default is TRUE which sums flows between the same nodes even if they are on different metabolic paths
sumOverStrains: Logical. Default is TRUE which means the strains are put into their functional group nodes and the flow are summed. When it is FALSE, each strain will have its own node.
convertToMoles: Logical. Default is TRUE

a list containing the edges and nodes