quickPlot2 function

Generic plotting showing results of microPop Now shows resources and microbes on one plot.

quickPlot2(
  soln,
  numR,
  numStrains,
  microbeNames,
  yLabel = "Concentration (g/L)",
  xLabel = "Time",
  sumOverStrains = TRUE,
  resourceLegendPosition = "topleft",
  microbeLegendPosition = "topleft",
  saveFig = FALSE,
  figType = "eps",
  figName = "microPopFig",
  cex.plot = 1,
  cex.legend = 0.7
)

Arguments

• soln: ODE output from microPopModel() i.e. matrix out$solution
• numR: Scalar. Number of resources
• numStrains: Scalar. Number of strains per group
• microbeNames: Vector of strings which contains the names of the microbial groups in the system e.g. c('Bacteroides','Acetogens')
• yLabel: String for y axis label. Default is "Concentration (g/L)"
• xLabel: String for x axis label. Default is "Time"
• sumOverStrains: Logical. Default=TRUE
• resourceLegendPosition: String. Position of legend in resource plot, default is 'topleft'
• microbeLegendPosition: String. Position of legend in microbe plot, default is 'topleft'
• saveFig: Logical. Default is FALSE
• figType: String. Default is "eps"
• figName: String. Default is "microPopFig"
• cex.plot: Multiplier for text size on axes text. Default is 1
• cex.legend: Multiplier for text size in legend. Default is 0.7

Returns

Nothing just generates a plot