allmeds function

Gets matrices of medians for each individual sample for all measured parameters for all clusters

allmeds(citrus.combinedFCSSet, citrus.foldClustering, citrus.foldFeatureSet)

Arguments

• citrus.combinedFCSSet: loaded from citrusClustering.RData file generated by Citrus run
• citrus.foldClustering: loaded from citrusClustering.RData file generated by Citrus run
• citrus.foldFeatureSet: computed from first two variables using citrus.calculateFoldFeatureSet function from citrus package

Returns

Returns a list with each element corresponding to a matrix (rows as samples, columns as measured parameters) for a different cluster (for the minimum threshold specified)

Examples

library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
              citrus.foldClustering=citrus.foldClustering,
              citrus.foldFeatureSet=citrus.foldFeatureSet)