clustermeds function

Gets matrix of medians for desired measured features for all clusters meeting threshold requirements specified in Citrus

clustermeds(citrus.foldFeatureSet, citrus.foldClustering, medsofinterest,
  citrus.combinedFCSSet)

Arguments

• citrus.foldFeatureSet: computed from first two variables using citrus.calculateFoldFeatureSet function from citrus package
• citrus.foldClustering: loaded from citrusClustering.RData file generated by Citrus run
• medsofinterest: The names of the columns from citrus.combinedFCSSet$data of interest to extract medians for
• citrus.combinedFCSSet: loaded from citrusClustering.RData file generated by Citrus run

Returns

Returns a matrix with columns corresponding to selected features and rows corresponding to samples

Examples

library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
medians<-clustermeds(citrus.foldFeatureSet=citrus.foldFeatureSet,
                     citrus.foldClustering=citrus.foldClustering,
                     medsofinterest=c("Red","Blue"),
                     citrus.combinedFCSSet=citrus.combinedFCSSet)