difMarkerPlots2 function

Plot dot plots of features where one cluster is significantly different from the reference cluster without processing data before hand

difMarkerPlots2(data, clusters, markers, diffclust, strat)

Arguments

• data: output from call to allmeds function
• clusters: clusterIDs of the desired clusters to compare and plot
• markers: indices of the columns of the data matrix for features to be analyse
• diffclust: clusterID of for cluster to statisticaly compare others to
• strat: clusterIDs for stratifying clusters as indicated by Citrus results

Returns

Dot plots for all features where one cluster is significantly different from the reference cluster

Examples

library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
              citrus.foldClustering=citrus.foldClustering,
              citrus.foldFeatureSet=citrus.foldFeatureSet)
graphs<-difMarkerPlots2(data=meds,clusters=c(19999,19972,19988),markers=c(2,3),
                        diffclust=19999,strat=19999)