plotdif2 function

Plot dot plots of features where one cluster is significantly different from the reference cluster

plotdif2(BJHdf, anovadata, strat)

Arguments

• BJHdf: results of a call to findsig
• anovadata: results of call to processforanova
• strat: clusterIDs for clusters that are stratifying

Returns

Dot plots for all features where one cluster is significantly different from the reference cluster

Examples

library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
              citrus.foldClustering=citrus.foldClustering,
              citrus.foldFeatureSet=citrus.foldFeatureSet)
filteredmeds<-findclust(data=meds,clusters=c(19999,19972,19988))
meds2<-filterMarker(clustdat=filteredmeds,markers=c(2,3))
foranova<-processforanova(filtereddata=meds2)
ttests<-posthoc(processedDat=foranova,clustIDdif=19999)
sig<-findSig(posHocRes=ttests)
graphs<-plotdif2(BJHdf=sig,anovadata=foranova,strat=19999)