mkde0.4 package

2D and 3D Movement-Based Kernel Density Estimates (MKDEs)

computeContourValues

Find thresholds for contour intervals

computeSizeMKDE

Compute the area or volume of an MKDE.

condordem

A RasterLayer containing a digital elevation model (DEM) for the condo...

condordem120

A RasterLayer containing a digital elevation model (DEM) for the condo...

computeAreaRaster

Calculate cell areas from elevation raster.

deselectLocationsOutsideBounds

Flag 3D locations with out-of-bounds z-coordinates

deselectNonMovementSteps

Flag non-movements so they are excluded from MKDE estimation

dugongdem

A RasterLayer containing bathymetry for the dugong data

estVarMKDE

Estimate move variances for 3D MKDE.

initializeAreaRaster

Initialize an area raster for a 2.5D MKDE.

initializeDensity

Calculate raster of density values for MKDE.

initializeMKDE2D

Set up a 2D MKDE object.

initializeMKDE3D

Set up a 3D MKDE object.

initializeMovementData

Initialize a movement data list

mkde-package

Movement-based kernel density estimates (MKDEs) in 2 or 3 spatial dime...

mkde2Dgrid

Movement-based kernel density estimate (MKDE) in 2D using Rcpp

mkde2Dinteraction

Probability of 2D spatial-temporal interaction.

mkde3Dgrid

Movement-based kernel density estimate (MKDE) in 3D using Rcpp

mkde3Dinteraction

Probability of 3D spatial-temporal interaction.

setMinimumZfromConstant

Set minimum z-axis value to a constant.

mkdeToTerra

MKDE to RasterLayer or RasterStack

pandadem

A RasterLayer containing a digital elevation model (DEM) for the panda...

plotMKDE

Make an image plot of an MKDE.

setMaximumZfromConstant

Initialize maximum allowable z-axis coordinates to a constant value.

setMaximumZfromRaster

Initialize maximum z-axis value from a raster

setMinimumZfromRaster

Set minimum z-axis values from a raster

writeInterpolatedPathVTK

Write path to VTK.

writeObservedLocationVTK

Write observed locations to VTK.

writeRasterToVTK

Write a 2D raster to XDMF XML wrapper and binary data file.

writeRasterToXDMF

Write a 2D raster to XDMF XML wrapper and binary data file.

writeToGRASS

Write MKDE to a GRASS GIS 3D ASCII raster file.

writeToVTK

Write MKDE to an ASCII Visualization Tool Kit (VTK) structured grid fi...

writeToXDMF

Write 3D MKDE to XDMF XML wrapper and binary data file.

Provides functions to compute and visualize movement-based kernel density estimates (MKDEs) for animal utilization distributions in 2 or 3 spatial dimensions.

  • Maintainer: Robert Sinkovits
  • License: GPL (>= 3)
  • Last published: 2024-12-11