momentuHMM1.5.5 package

AIC

Calculate Akaike information criterion model weights

Matrix of all probabilities

Check parameter length and order for a fitHMM (or MIfitHMM) model

Confidence intervals for working (i.e., beta) parameters

Convert standard direction angles (in radians relative to the x-axis) ...

Confidence intervals for the natural (i.e., real) parameters

Merge crwData or crwHierData object with additional data streams and/o...

Fit and predict tracks for using crawl

Constructor of crwData objects

Constructor of crwHierData objects

Constructor of crwHierSim objects

Constructor of crwSim objects

Bernoulli density function

Probability density function of the beta distribution (written in C++)

Categorical density function

Exponential density function

Gamma density function

Calculate distance between points y and z and turning angle between po...

Log-normal density function

logistic density function

C++ implementation of multivariate Normal probability density function...

negative binomial density function

Normal density function

Poisson density function

student t density function

Von Mises density function

Weibull density function

Wrapped Cauchy density function

Example dataset

Expand vector of free working parameters to vector of all working para...

Fit a multivariate HMM to the data

Convert hierarchical HMM structure to a conventional HMM

Get names of any covariates used in probability distribution parameter...

Get design matrix

Get starting values from momentuHMM, miHMM, or miSum object returned b...

Get starting values for new model from existing momentuHMM or `momen...

Get starting values on working scale based on design matrix and other ...

Transition probability matrix

Constructor of HMMfits objects

Is crwData

Is crwHierData

Is crwHierSim

Is crwSim

Is HMMfits

Is miHMM

Is miSum

Is momentuHierHMM

Is momentuHierHMMData

Is momentuHMM

Is momentuHMMData

Forward log-probabilities

Backward log-probabilities

Fit HMMs to multiple imputation data

Constructor of miHMM objects

Calculate pooled parameter estimates and states across multiple imputa...

Constructor of miSum objects

Mixture probabilities

Constructor of momentuHierHMM objects

Constructor of momentuHierHMMData objects

Constructor of momentuHMM objects

Constructor of momentuHMMData objects

Scaling function: natural to working parameters.

Negative log-likelihood function

Negative log-likelihood

Parameters definition

Plot crwData

Plot miHMM

Plot miSum

Plot momentuHMM

Plot momentuHMMData or momentuHierHMMData

Plot pseudo-residuals

Plot observations on satellite image

Plot observations on raster image

Plot states

Plot stationary state probabilities

Preprocessing of the data streams and covariates

Print miHMM

Print miSum

Print momentuHMM

Pseudo-residuals

Random effects estimation

Set modelName for a momentuHMM, miHMM, HMMfits, or miSum obj...

Set stateNames for a momentuHMM, miHMM, HMMfits, or miSum ob...

Simulation tool

Observation error simulation tool

State probabilities

Stationary state probabilities

Summary momentuHMMData

Calculate proportion of time steps assigned to each state (i.e. activi...

Transition probability matrix

Turning angle

Viterbi algorithm

Scaling function: working to natural parameters

Get XB