monitoR1.0.7 package

Acoustic Template Detection in R

batchDetection

Batch Template Detection

bindEvents

Summarize/Archive Manually Derived Sound Events

changeSampRate

Resample Wave objects

collapseClips

Summarize/Archive Song Events

combineTemplates

Combine Acoustic Template Lists

compareTemplates

Compare Performance of Templates

cutWave

Extract Shorter Wave Objects from other Wave Objects

dbDownload

Retrieve Card-Recorder ID Values or Survey Names from a Database

dbDownloadResult

Create detectionList Objects from Data Stored in a Database

dbDownloadTemplate

Retrieve templates from an acoustics database

dbSchema

Upload a MySQL Database Schema to Create Tables in an Acoustics Databa...

dbUploadAnno

Upload Spectrogram Annotations to an Acoustics Database

dbUploadResult

Upload Detection Results to an Acoustics Database

dbUploadSurvey

Upload Survey Metadata to an Acoustics Database

dbUploadTemplate

Upload Acoustic Templates to a Database

detectionList-class

Class "detectionList"

eventEval

Evaluate Detected Events with Known Event Sources and Times

fileCopyRename

Copy and Rename Sound Files from Portable Media

findPeaks

Find Score Peaks and Detections in a templateScores Object

getDetections

Extract Detections or Peaks from a detectionList Object

getTemplates

Extract a Template List

index-methods

Indexing (Extraction) Methods for monitoR Package

internals

monitoR Internal Functions

makeTemplate

Make an Acoustic Template

monitoR-package

Automated Acoustic Monitoring--overview and examples

mp3Subsamp

Extract Short Surveys from Longer mp3 Recordings

plot-methods

Methods for the plot Function

readMP3

Read MP3 Files into a Wave Object

readTemplates

Read Acoustic Templates from a Local Disk

show-methods

Methods for the show and summary Functions

showPeaks

View or Verify Detections or Peaks

specCols

Color Vectors for Spectrograms

Template-class

Class "Template"

templateComment

Query or Set Template Cutoffs

templateCutoff

Query or Set Template Cutoffs

TemplateList-class

Class "TemplateList"

templateMatching

Calculate Spectrogram Template Matching Scores

templateNames

Names of Templates

templatePath

Song clip path of Templates

templateScores-class

Class "templateScores"

timeAlign

Condense Detections or Peaks from Multiple Templates

viewSpec

Interactively View and Annotate Spectrograms

writeTemplates

Write Acoustic Templates to Text Files

Acoustic template detection and monitoring database interface. Create, modify, save, and use templates for detection of animal vocalizations. View, verify, and extract results. Upload a MySQL schema to a existing instance, manage survey metadata, write and read templates and detections locally or to the database.