Modelling Reproduction and Survival Data in Ecotoxicology
Test in a well-formed argument to function 'survData' if the concentra...
Predict % Lethal Concentration at the maximum time point (default).
Predict the Multiplication Factor leading to x% of reduction in surviv...
Create a list giving data to use in Bayesian inference.
MOdelling tools for Reproduction and Survival data in Ecotoxicology
Generic method to plot priors and posteriors.
Plot posteriors vs priors
Plotting method for LCx objects
Plotting method for MFx objects
Plotting method for reproData objects
Plotting method for reproFitTT objects
Plotting method for survData objects
Plotting method for survDataVarExp objects
Plotting method for survFit objects
Plotting method for survFitPredict_Nsurv objects.
Plotting method for survFitPredict objects
Plotting method for survFitTKTD objects
Plotting method for survFitTT objects
Plotting method for survFit objects
Plot dose-response from raw data
Plot dose-response from reproData objects
Plot dose-response from survData objects
Posterior predictive check plot
Checking goodness-of-fit method for survFitPredict and `survFitPredi...
Predict method for survFit objects
Predict method for survFit objects
Predict method for survFit objects
Print msgTables objects
Print of reproFitTT object
Print of survFit object
Print of survFitTKTD object
Print of survFitTT object
Print of survFitVarExp object
Density distribution of priors.
Density distribution of priors from a survFit object.
Create a list of scalars giving priors to use in Bayesian inference.
Creates a dataset for reproduction toxicity analysis
Checks if an object can be used to perform reproduction toxicity data ...
Fits a Bayesian concentration-effect model for target-time reproductio...
Summary of reproData object
Summary of reproFitTT object
Summary of survDataCstExp object
Summary of survDataVarExp object
Summary of survFit object
Summary of survFitTKTD object
Summary of survFitTT object
Joins a concentration with a survival data set into an argument for 's...
Creates a data set for survival analysis
Fits a TKTD model for survival analysis using Bayesian inference
Fits a TKTD for survival analysis using Bayesian inference for `survDa...
Fits a Bayesian concentration-response model for target-time survival ...
Fits a Bayesian concentration-response model for target-time survival ...
Advanced methods for a valuable quantitative environmental risk assessment using Bayesian inference of survival and reproduction Data. Among others, it facilitates Bayesian inference of the general unified threshold model of survival (GUTS). See our companion paper Baudrot and Charles (2021) <doi:10.21105/joss.03200>, as well as complementary details in Baudrot et al. (2018) <doi:10.1021/acs.est.7b05464> and Delignette-Muller et al. (2017) <doi:10.1021/acs.est.6b05326>.
Useful links