moveHMM1.9 package

Data to produce plots of fitted model

Is moveData

Is moveHMM

Forward log-probabilities

Backward log-probabilities

Constructor of moveData objects

Constructor of moveHMM objects

AIC

Matrix of all probabilities

Confidence intervals for angle parameters

Confidence intervals

Exponential density function

Gamma density function

Log-normal density function

Von Mises density function

Weibull density function

Wrapped Cauchy density function

Example data simulation

Fit an HMM to the data

Discrete colour palette for states

Scaling function: natural to working parameters.

Negative log-likelihood function

Negative log-likelihood

Parameters definition

Plot moveData

Plot moveHMM

Plot pseudo-residuals

Plot observations on satellite image

Plot states

Plot stationary state probabilities

Predict stationary state probabilities

Predict transition probabilities for new covariate values

Preprocessing of the tracking data

Print moveHMM

Pseudo-residuals

Simulation tool

State probabilities

Stationary state probabilities

Summary moveData

Transition probability matrix

Turning angle

Viterbi algorithm

Scaling function: working to natural parameters