Mark-Recapture Analysis
F.sat.lik
F.step.cjs - Stepwise model selection for CJS models.
F.update.df - Update degrees of freedom in a Cormack-Jolly-Seber fitte...
3-Dimensional capture-recapture model matrices
F.cjs.covars
F.cjs.estim - Cormack-Jolly-Seber estimation
F.cjs.gof
F.cjs.simulate - Generation of capture histories that follow a CJS mod...
F.cr.model.avg - Model averaging of mark-recapture parameters.
Capture-Recapture model matrix
F.fit.table - Produce a summary table of model fit statistics.
F.huggins.estim - Estimation of Huggins closed population capture-reca...
Expand Individual-varying covariates in models
lines.cjs
MRA - Mark Recapture Analysis
mra.control - Control over MRA fitting process
Plot CJS Model
Plot size estimates
predict.cjs
Print Cormack-Jolly-Seber (CJS) Models
Print Huggin's Model objects
print.nhat
Residuals for CJS Model
Expand Time-varying covariates in models
Accomplishes mark-recapture analysis with covariates. Models available include the Cormack-Jolly-Seber open population (Cormack (1972) <doi:10.2307/2556151>; Jolly (1965) <doi:10.2307/2333826>; Seber (1965) <doi:10.2307/2333827>) and Huggin's (1989) <doi:10.2307/2336377> closed population. Link functions include logit, sine, and hazard. Model selection, model averaging, plot, and simulation routines included. Open population size by the Horvitz-Thompson (1959) <doi:10.2307/2280784> estimator.