msSPChelpR0.9.1 package

Helper Functions for Second Primary Cancer Analyses

asir

Calculate age-standardized incidence rates

calc_futime

Calculate follow-up time per case until end of follow-up depending on ...

calc_futime_tt

Calculate follow-up time per case until end of follow-up depending on ...

calc_refrates

Calculate age-, sex-, cohort-, region-specific incidence rates from a ...

histgroup_iarc

Create variable for groups of malignant neoplasms considered to be his...

ir_crosstab

Calculate crude incidence rates and crosstabulate results by break var...

ir_crosstab_byfutime

Calculate crude incidence rates and cross-tabulate results by break va...

msSPChelpR-package

msSPChelpR: Helper Functions for Second Primary Cancer Analyses

msSPChelpR

msSPChelpR

pat_status

Determine patient status at specific end of follow-up - tidyverse vers...

pat_status_tt

Determine patient status at specific end of follow-up - tidytable vers...

pipe

Pipe operator

renumber_time_id

Renumber the time ID per case (i.e. Tumor sequence)

renumber_time_id_tt

Renumber the time ID per case (i.e. Tumor sequence) - tidytable versio...

reshape_long

Reshape dataset to long format - stats::reshape version

reshape_long_tidyr

Reshape dataset to wide format - tidyr version

reshape_long_tt

Reshape dataset to wide format - tidytable version

reshape_wide

Reshape dataset to wide format

reshape_wide_tidyr

Reshape dataset to wide format - tidyr version

reshape_wide_tt

Reshape dataset to wide format - tidytable version

sir_byfutime

Calculate standardized incidence ratios with custom grouping variables...

sir_ratio

Calculate Ratio of two SIRs or SMRs

summarize_sir_results

Summarize detailed SIR results

vital_status

Determine vital status at end of follow-up depending on pat_status - t...

vital_status_tt

Determine vital status at end of follow-up depending on pat_status - t...

A collection of helper functions for analyzing Second Primary Cancer data, including functions to reshape data, to calculate patient states and analyze cancer incidence.

  • Maintainer: Marian Eberl
  • License: GPL-3
  • Last published: 2024-01-23