MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Check that the data package is installed
List the collections available in the msigdbr package
List the species available in the msigdbr package
msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Retrieve the gene sets data frame
Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>, Castanza et al. 2023 <doi:10.1038/s41592-023-02014-7>) as an R data frame. The package includes the human genes as listed in MSigDB as well as the corresponding symbols and IDs for frequently studied model organisms such as mouse, rat, pig, fly, and yeast.