Multivariate Analysis and Visualization for Biological Data
A function to visualize the results of a MANOVA
An internal function for getting empirical p values
Estimates the heritability of a binomial trait
Power analysis for estimating the heritability of a binomial trait
A function to create a box and whisker plot by group ID
Function to impute missing data.
A Function to perform step-wise discriminant analysis using F statisti...
A function to visualize the Functional Landscape of measured traits
A function to visualize the results of a discriminant analysis
A function to visualize trait loadings onto discriminant function and ...
A function to create a pairwise comparison matrix
A function to scale data to mean 0
Multivariate Analysis and Visualization for Biological Data
A function to compute partial F statistics
A function to scale data to the percent of the maximum observed
A function to determine whether two groups are in statistically differ...
A function to plot the results of a binomPower run
A function to estimate the error rate for FSelect and PermuteLDA.
A function to perform a probabilistic principle component analysis
An internal function of binomPower, which actually calculates the p va...
A function to convert data into a z-score
Code to support a systems biology research program from inception through publication. The methods focus on dimension reduction approaches to detect patterns in complex, multivariate experimental data and places an emphasis on informative visualizations. The goal for this project is to create a package that will evolve over time, thereby remaining relevant and reflective of current methods and techniques. As a result, we encourage suggested additions to the package, both methodological and graphical.