multilevelcoda1.3.1 package

Extract Compositional Data from complr object.

Bayes Factors from Marginal Likelihoods

Fit Bayesian generalised (non-)linear multilevel compositional model v...

Between-person Simple Substitution

Between-person Average Substitution

Build Base Pairwise Substitution

Reference Grid for substitution model.

Build Sequential Binary Partition

Model Coefficients

Indices from a (dataset of) Multilevel Composition(s) (deprecated.)

Indices from a (dataset of) Multilevel Composition(s)

Constructor function for substitution class.

Extract Diagnostic Quantities from brmsfit Models in brmcoda

Index brmcoda objects

Expected Values of the Posterior Predictive Distribution

Population-Level Estimates

Helper functions used only internally to estimate substitution model

Checks if argument is a brmcoda object

Checks if argument is a complr object

Checks if argument is a substitution object

Interface to shinystan

Efficient approximate leave-one-out cross-validation (LOO)

MCMC Plots Implemented in bayesplot

Mean amounts and mean compositions presented in a complr object.

Extracting the Model Frame from a Formula or Fit from brmcoda object

multilevelcoda Simulation Study Results

Extract Number of Observations from brmcoda object

Create a matrix of output plots from a brmcoda's brmsfit object

Estimate pivot balance coordinates by refitting model.

Estimate pivot balance coordinates by rotating sequential binary parti...

Estimate pivot balance coordinates

Trace and Density Plots for MCMC Draws plot

Substitution Plot

Posterior Predictive Checks for brmcoda Objects

Draws from the Posterior Predictive Distribution

Print a Summary for a fitted brmsfit model in a brmcoda object

Print a Summary for a complr object

Print a Summary for a substitution object

Summary for a complr object

Extract Priors of a brmsfit from a brmcoda object

Group-Level Estimates

Posterior Draws of Residuals/Predictive Errors

Simple Substitution

Average Substitution

Multilevel Compositional Substitution Analysis

Create a Summary of a fitted brmsfit model in a brmcoda object

Create a Summary of a complr object

Create a Summary of a fitted brmsfit model from a pivot_coord obje...

Create a Summary of a Substitution Model represented by a `substitutio...

Update brmcoda models

Update complr

Variance of compositions presented in a complr object.

Extract Variance and Correlation Components

Covariance and Correlation Matrix of Population-Level Effects

Within-person Simple Substitution

Within-person Average Substitution