multilevelcoda1.3.0.2 package

MCMC Plots Implemented in bayesplot

Mean amounts and mean compositions presented in a complr object.

Extracting the Model Frame from a Formula or Fit from brmcoda object

multilevelcoda Simulation Study Results

Extract Number of Observations from brmcoda object

Create a matrix of output plots from a brmcoda's brmsfit object

Trace and Density Plots for MCMC Draws plot

Substitution Plot

Posterior Predictive Checks for brmcoda Objects

Draws from the Posterior Predictive Distribution

Print a Summary for a fitted brmsfit model in a brmcoda object

Print a Summary for a complr object

Print a Summary for a substitution object

Summary for a complr object

Extract Priors of a brmsfit from a brmcoda object

Bayes Factors from Marginal Likelihoods

Interface to shinystan

Efficient approximate leave-one-out cross-validation (LOO)

Extract Compositional Data from complr object.

Base Pairwise Substitution

Fit Bayesian generalised (non-)linear multilevel compositional model v...

Between-person Simple Substitution

Between-person Average Substitution

Reference Grid for substitution model.

Model Coefficients

Indices from a (dataset of) Multilevel Composition(s) (deprecated.)

Indices from a (dataset of) Multilevel Composition(s)

Constructor function for substitution class.

Extract Diagnostic Quantities from brmsfit Models in brmcoda

Index brmcoda objects

Expected Values of the Posterior Predictive Distribution

Population-Level Estimates

Helper functions used only internally to estimate substitution model

Checks if argument is a brmcoda object

Checks if argument is a complr object

Checks if argument is a substitution object

Group-Level Estimates

Posterior Draws of Residuals/Predictive Errors

Simple Substitution

Average Substitution

Multilevel Compositional Substitution Analysis

Create a Summary of a fitted brmsfit model in a brmcoda object

Create a Summary of a complr object

Create a Summary of a Substitution Model represented by a `substitutio...

Update brmcoda models

Update complr

Variance of compositions presented in a complr object.

Extract Variance and Correlation Components

Covariance and Correlation Matrix of Population-Level Effects

Within-person Simple Substitution

Within-person Average Substitution