Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks
Calculate population density estimates
Calculate posterior capture and survival probabilities
Calculate posterior capture and recapture probabilities
Calculate posterior capture and recapture probabilities
Fit open population survival models for ``traditional'' capture-mark-r...
Fit closed population abundance models for ``traditional'' capture-mar...
Fit spatial population abundance models for ``traditional'' capture-ma...
Fit open population survival models for capture-mark-recapture data co...
Fit closed population abundance models for capture-mark-recapture data...
Fit spatially-explicit population abundance models for capture-mark-re...
Class "multimarkSCRsetup"
Class "multimarksetup"
Multimodel inference for 'multimark' open population survival models
Multimodel inference for 'multimark' closed population abundance model...
Multimodel inference for 'multimark' spatial population abundance mode...
Plot spatial capture-mark-recapture data
Generate model inputs for fitting 'multimark' models
Generate model inputs for fitting spatial 'multimark' models
Simulate open population capture-mark-recapture data arising from mult...
Simulate closed population capture-mark-recapture data arising from mu...
Simulate spatially-explicit capture-mark-recapture data from a (demogr...
Traditional and spatial capture-mark-recapture analysis with multiple non-invasive marks. The models implemented in 'multimark' combine encounter history data arising from two different non-invasive "marks", such as images of left-sided and right-sided pelage patterns of bilaterally asymmetrical species, to estimate abundance and related demographic parameters while accounting for imperfect detection. Bayesian models are specified using simple formulae and fitted using Markov chain Monte Carlo. Addressing deficiencies in currently available software, 'multimark' also provides a user-friendly interface for performing Bayesian multimodel inference using non-spatial or spatial capture-recapture data consisting of a single conventional mark or multiple non-invasive marks. See McClintock (2015) <doi:10.1002/ece3.1676> and Maronde et al. (2020) <doi:10.1002/ece3.6990>.