mvabund4.2.1 package

Statistical Methods for Analysing Multivariate Abundance Data

anova.manyany

Analysis of Deviance for Many Univariate Models Fitted to Multivariate...

anova.manyglm

Analysis of Deviance for Multivariate Generalized Linear Model Fits fo...

anova.manylm

ANOVA for Linear Model Fits for Multivariate Abundance Data

anova.traitglm

Testing for a environment-by-trait (fourth corner) interaction by anal...

best.r.sq

Use R^2 to find the variables that best explain a multivariate respons...

boxplot.mvabund

Boxplots for multivariate abundance Data

coefplot.manyglm

Plots the coefficients of the covariates of a manyglm object with conf...

cv.glm1path

Fits a path of Generalised Linear Models with LASSO (or L1) penalties,...

deviance.manylm

Model Deviance

extend.x.formula

Extend a Formula to all of it's Terms

formulaUnimva

Create a List of Univariate Formulas

glm1

Fits a Generalised Linear Models with a LASSO (or L1) penalty, given a...

glm1path

Fits a path of Generalised Linear Models with LASSO (or L1) penalties,...

logLik.manylm

Calculate the Log Likelihood

manyany

Fitting Many Univariate Models to Multivariate Abundance Data

manyglm

Fitting Generalized Linear Models for Multivariate Abundance Data

manylm.fit

workhose functions for fitting multivariate linear models

manylm

Fitting Linear Models for Multivariate Abundance Data

meanvar.plot

Construct Mean-Variance plots for Multivariate Abundance Data

mvabund-internal

Internal mvabund Objects

mvabund-package

Statistical methods for analysing multivariate abundance data

mvabund

Multivariate Abundance Data Objects

mvformula

Model Formulae for Multivariate Abundance Data

plot.manyany

Plot Diagnostics for a manyany or glm1path Object

plot.manylm

Plot Diagnostics for a manylm or a manyglm Object

plot.mvabund

Plot Multivariate Abundance Data and Formulae

plotMvaFactor

Draw a Mvabund Object split into groups.

predict.manyglm

Predict Method for MANYGLM Fits

predict.manylm

Model Predictions for Multivariate Linear Models

predict.traitglm

Predictions from fourth corner model fits

residuals.manyglm

Residuals for MANYGLM, MANYANY, GLM1PATH Fits

ridgeParamEst

Estimation of the ridge parameter

shiftpoints

Calculate a shift for plotting overlapping points

summary.manyglm

Summarizing Multivariate Generalized Linear Model Fits for Abundance D...

summary.manylm

Summarizing Linear Model Fits for Multivariate Abundance Data

traitglm

Fits a fourth corner model for abundance as a function of environmenta...

unabund

Remove the mvabund Class Attribute

A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. See 'mvabund-package.Rd' for details of overall package organization. The package is implemented with the Gnu Scientific Library (<http://www.gnu.org/software/gsl/>) and 'Rcpp' (<http://dirk.eddelbuettel.com/code/rcpp.html>) 'R' / 'C++' classes.

  • Maintainer: David Warton
  • License: LGPL (>= 2.1)
  • Last published: 2022-02-16