mvdalab1.7 package

Multivariate Data Analysis Laboratory

ap.plot

Actual versus Predicted Plot and Residuals versus Predicted

bca.cis

Bias-corrected and Accelerated Confidence Intervals

bidiagpls.fit

Bidiag2 PLS

BiPlot

Generates a biplot from the output of an 'mvdareg' and 'mvdapca' objec...

acfplot

Plot of Auto-correlation Funcion

boot.plots

Plots of the Output of a Bootstrap Simulation for an mvdareg Object

coef.mvdareg

Extract Information From a plsFit Model

coefficients.boots

BCa Summaries for the coefficient of an mvdareg object

coefficients

Extract Summary Information Pertaining to the Coefficients resulting f...

coefficientsplot2D

2-Dimensionsl Graphical Summary Information Pertaining to the Coeffici...

coefsplot

Graphical Summary Information Pertaining to the Regression Coefficient...

contr.niets

Cell Means Contrast Matrix

ellipse.mvdalab

Ellipses, Data Ellipses, and Confidence Ellipses

imputeBasic

Naive imputation of missing values.

imputeEM

Expectation Maximization (EM) for imputation of missing values.

imputeQs

Quartile Naive Imputation of Missing Values

imputeRough

Naive Imputation of Missing Values for Dummy Variable Model Matrix

introNAs

Introduce NA's into a Dataframe

jk.after.boot

Jackknife After Bootstrap

loadings.boots

BCa Summaries for the loadings of an mvdareg object

loadings

Summary Information Pertaining to the Bootstrapped Loadings

loadingsplot

Graphical Summary Information Pertaining to the Loadings

loadingsplot2D

2-Dimensionsl Graphical Summary Information Pertaining to the Loadings...

mewma

Generates a Hotelling's T2 Graph of the Multivariate Exponentially Wei...

model.matrix.mvdalab

model.matrix creates a design (or model) matrix.

MultCapability

Principal Component Based Multivariate Process Capability Indices

MVcis

Calculate Hotelling's T2 Confidence Intervals

MVComp

Traditional Multivariate Mean Vector Comparison

mvdaboot

Bootstrapping routine for mvdareg objects

mvdalab-package-title

Multivariate Data Analysis Laboratory (mvdalab)

mvdaloo

Leave-one-out routine for mvdareg objects

mvrnorm.svd

Simulate from a Multivariate Normal, Poisson, Exponential, or Skewed D...

my.dummy.df

Create a Design Matrix with the Desired Constrasts

no.intercept

Delete Intercept from Model Matrix

pca.nipals

PCA with the NIPALS algorithm

pcaFit

Principal Component Analysis

PE

Percent Explained Variation of X

perc.cis

Percentile Bootstrap Confidence Intervals

plot.cp

Plotting Function for Score Contributions.

plot.mvcomp

Plot of Multivariate Mean Vector Comparison

plot.mvdareg

General plotting function for mvdareg and mvdapaca objects.

plot.plusminus

2D Graph of the PCA scores associated with a plusminusFit

plot.R2s

Plot of R2

plot.smc

Plotting function for Significant Multivariate Correlation

plot.sr

Plotting function for Selectivity Ratio.

plot.wrtpls

Plots of the Output of a Permutation Distribution for an mvdareg Obj...

plsFit

Partial Least Squares Regression

plusminus.fit

PlusMinus (Mas-o-Menos)

plusminus.loo

Leave-one-out routine for plusminus objects

plusminusFit

Plus-Minus (Mas-o-Menos) Classifier

predict.mvdareg

Model Predictions From a plsFit Model

print.mvdalab

Print Methods for mvdalab Objects

print.plusminus

Print Methods for plusminus Objects

proCrustes

Comparison of n-point Configurations vis Procrustes Analysis

R2s

Cross-validated R2, R2 for X, and R2 for Y for PLS models

ScoreContrib

Generates a score contribution plot

scoresplot

2D Graph of the scores

SeqimputeEM

Sequential Expectation Maximization (EM) for imputation of missing val...

smc.acfTest

Test of the Residual Significant Multivariate Correlation Matrix for t...

smc

Significant Multivariate Correlation

sr

Selectivity Ratio

T2

Generates a Hotelling's T2 Graph

weight.boots

BCa Summaries for the weights of an mvdareg object

weights

Extract Summary Information Pertaining to the Bootstrapped weights

weightsplot

Extract Graphical Summary Information Pertaining to the Weights

weightsplot2D

Extract a 2-Dimensional Graphical Summary Information Pertaining to th...

wrtpls.fit

Weight Randomization Test PLS

Xresids

Generates a Graph of the X-residuals

XresidualContrib

Generates the squared prediction error contributions and contribution ...

y.loadings.boots

Extract Summary Information Pertaining to the y-loadings

y.loadings

Extract Summary Information Pertaining to the y-loadings

An open-source implementation of latent variable methods and multivariate modeling tools. The focus is on exploratory analyses using dimensionality reduction methods including low dimensional embedding, classical multivariate statistical tools, and tools for enhanced interpretation of machine learning methods (i.e. intelligible models to provide important information for end-users). Target domains include extension to dedicated applications e.g. for manufacturing process modeling, spectroscopic analyses, and data mining.

  • Maintainer: Nelson Lee Afanador
  • License: GPL-3
  • Last published: 2022-10-05