spatialTIME_summary_functions function

spatialTIME summary function extraction

spatialTIME_summary_functions(
  mxFDAobject,
  metric = "uni k",
  markers = NULL,
  r_range = 0:100,
  num_permutations = 50,
  edge_correction = "trans",
  permute = TRUE,
  workers = 1,
  xloc = "x",
  yloc = "y"
)

Arguments

• mxFDAobject: object of class mxFDA for which to calculate summary functions
• metric: string vector with combination of uni/bi k/g
• markers: column names of spatial
• r_range: vector of radii to calculate metrics
• num_permutations: integer for the number of permutations to perform
• edge_correction: character vector of length 1 or 2 depending on the metrics for edge corrections to perform
• permute: logical whether to permute CSR or not. Required TRUE for Nearest Neighbor G
• workers: integer for number of cores to use to calculate derived variables
• xloc, yloc: columns in the spatial data which to use for point locations

Returns

mxFDA object with the summary function slots filled according to input metric

Details

Examples

# example code

Author(s)

Alex Soupir alex.soupir@moffitt.org