Microclimatic Data Processing
Length function for myClim object
Aggregate data by function
Cumulative sum
Freezing Degree Days
Growing Degree Days
Summary of TRUE/FALSE snow sensor
Snow detection from temperature
Converting Tomst dendrometer values to micrometers
Calculate vapor pressure deficit (in kPa)
Conversion of raw TMS soil moisture values to volumetric water content...
Calculates coefficients for TMS moisture conversion to VWC
Default temperature drift for TMS moisture in the air.
Default ref. temperate for TMS moisture calibration
Default temperature drift for TMS moisture in the water
Count sensor id see mc_agg()
Coverage sensor id see mc_agg()
Radius difference sensor id
Default sensor for TOMST Dendrometer radius difference
Default sensor for TOMST Dendrometer temperature
Freezing Degree Days sensor id see mc_calc_fdd()
Growing Degree Days sensor id see mc_calc_gdd()
Onset HOBO external temperature sensor id
Onset HOBO humidity sensor id
Onset HOBO temperature sensor id
General integer sensor id
General logical sensor id
Precipitation sensor id
General real sensor id
Relative humidity sensor id
Snow existence sensor id see mc_calc_snow()
Height of newly fallen snow sensor id
Height snow sensor id
Time of sun shine sensor id
Temperature sensor id
Default sensor for TOMST Thermologger temperature
Default sensor for TOMST TMS raw soil moisture
Default sensor for TOMST TMS soil temperature
Default sensor for TOMST TMS temperature of soil surface
Default sensor for TOMST TMS air temperature
Vapor Pressure Deficit sensor id see mc_calc_vpd()
Volumetric soil moisture sensor id see mc_calc_vwc()
Speed of wind sensor id
Class for Logger File Data Format
Standardised myClim soil moisture variables
Standardised myClim temperature variables
Standardised myClim vapor pressure deficit variables
Filter data from myClim object
Class for reading HOBO logger files
Call cleaning log
Count data
Get joining info table
Get loggers info table
Get localities metadata table
Get table of sensors range
Get states (tags) info table
Get sensors info table
Joining time-series from repeated downloads
Load myClim object
Class for locality metadata
Class for logger clean info
Class for logger metadata
Class for myClim object metadata
Class for myClim object metadata in Agg-format
Class for physical
Plot data - image
Plot data - ggplot2 geom_line
Plot data from loggers
Plot data - ggplot2 geom_raster
Load sensor calibration parameters to correct microclimatic records
Sensors calibration
Cleaning datetime series
Crop datetime
Fill NA
Merge myClim objects
Set metadata of localities
Set metadata of sensors
Set solar time offset against UTC time
Detection of out-of-soil measurements from TMS logger
Reading files with locality metadata
Reading files or directories
Reading data from long data.frame
Reading data from TubeDB
Reading data from wide data.frame
Export values to long table
Export values to wide table
Save myClim object
Class for sensor definition
Class for sensor metadata
Delete sensor states (tags)
Convert a sensor to a state
Insert new sensor states (tags)
Create states for outlying values
Replace values by states with tag
Convert states to logical (TRUE/FALSE) sensor
Update sensor states (tags)
Class for reading TOMST logger files
Class for reading TMS join files
myClim: Microclimatic Data Processing
Custom list for myClim object
Print function for myClim object
Extract localities with []
Handling the microclimatic data in R. The 'myClim' workflow begins at the reading data primary from microclimatic dataloggers, but can be also reading of meteorological station data from files. Cleaning time step, time zone settings and metadata collecting is the next step of the work flow. With 'myClim' tools one can crop, join, downscale, and convert microclimatic data formats, sort them into localities, request descriptive characteristics and compute microclimatic variables. Handy plotting functions are provided with smart defaults.