naryn2.6.32 package

Native Access Medical Record Retriever for High Yield Analytics

dot-create_logical_track_filter

Create a filter for logical track

dot-emr_expr_vars

Get a vector of variables inside an expression

dot-emr_filter

Parse an R filter string

dot-emr_vtrack.get

Get virtual track parameters given a string

dot-naryn

An environment for storing the package global variables

emr_annotate

Annotates id-time points table

emr_cor

Calculates correlation statistics for pairs of track expressions

emr_date2time

Converts date and hour to internal time format

emr_db.connect

Initializes connection with Naryn Database

emr_db.reload

Reloads database

emr_db.subset.ids

Returns the ids that constitute the current ids subset

emr_db.subset.info

Returns information about the current subset

emr_db.subset

Defines an ids subset

emr_db.unload

Unload all tracks from naryn database

emr_dist

Calculates distribution of track expressions

emr_download_example_data

Download example database

emr_entries.get_all

Get all entries

emr_entries.get

Get an entry

emr_entries.ls

List entries

emr_entries.reload

Reload entries from disk

emr_entries.rm_all

Remove all entries

emr_entries.rm

Remove an entry

emr_entries.set

Set an entry

emr_extract

Returns evaluated track expression

emr_filter.attr.src

Get or set attributes of a named filter

emr_filter.clear

Clear all filters from the current environment

emr_filter.create_from_name

Create a filter from an automatically generated name

emr_filter.create

Creates a new named filter

emr_filter.exists

Checks whether the named filter exists

emr_filter.info

Returns the definition of a named filter

emr_filter.ls

Returns a list of named filters

emr_filter.name

Generate a default name for a naryn filter

emr_filter.rm

Deletes a named filter

emr_filters.info

Returns the filter definition of named filters given a filter expressi...

emr_ids_coverage

Returns ids coverage per track

emr_ids_vals_coverage

Returns ids coverage per value track

emr_monthly_iterator

Create an iterator that goes every year/month

emr_quantiles

Calculates quantiles of a track expression

emr_screen

Finds Id-Time points that match track expression

emr_summary

Calculates summary statistics of track expression

emr_time

Convert time periods to internal time format

emr_time2char

Convert time to character format

emr_time2date

Convert from internal time to year, month, day, hour

emr_time2dayofmonth

Converts time from internal format to a day of month

emr_time2hour

Converts time from internal format to an hour

emr_time2month

Converts time from internal format to a month

emr_time2posix

Convert EMR time to POSIXct

emr_time2year

Converts time from internal format to a year

emr_track.addto

Adds new records to a track

emr_track.attr.export

Returns attributes values of tracks

emr_track.attr.get

Returns the value of the track attribute

emr_track.attr.rm

Deletes a track attribute

emr_track.attr.set

Assigns a value to the track attribute

emr_track.create

Creates a track from a track expression

emr_track.dbs

Returns a vector of db ids which have a version of the track

emr_track.exists

Checks whether the track exists

emr_track.ids

Returns track ids

emr_track.import

Imports a track from a file or data-frame

emr_track.info

Returns information about the track.

emr_track.logical.create

Creates a logical track

emr_track.logical.exists

Is a track logical

emr_track.logical.info

Returns information about a logical track

emr_track.logical.rm

Deletes a logical track

emr_track.ls

Returns a list of track names

emr_track.mv

Moves (renames) a track

emr_track.percentile

Returns track percentile of the values

emr_track.readonly

Gets or sets "read-only" property of a track

emr_track.rm

Deletes a track

emr_track.unique

Returns track values

emr_track.var.get

Returns value of a track variable

emr_track.var.ls

Returns a list of track variables for a track

emr_track.var.rm

Deletes a track variable

emr_track.var.set

Assigns value to a track variable

emr_vtrack.attr.src

Get or set attributes of a virtual track

emr_vtrack.clear

Clear all virtual tracks from the current environment

emr_vtrack.create_from_name

Create a virtual track from an automatically generated name

emr_vtrack.create

Creates a new virtual track

emr_vtrack.exists

Checks whether the virtual track exists

emr_vtrack.info

Returns the definition of a virtual track

emr_vtrack.ls

Returns a list of virtual track names

emr_vtrack.name

Generate a default name for a virtual track

emr_vtrack.rm

Deletes a virtual track

naryn-package

Toolkit for medical records data analysis

pipe

Pipe operator

string_to_var

Create a syntactically valid variable name from a string

var_to_string

Decode a variable created by string_to_var

A toolkit for medical records data analysis. The 'naryn' package implements an efficient data structure for storing medical records, and provides a set of functions for data extraction, manipulation and analysis.

  • Maintainer: Aviezer Lifshitz
  • License: MIT + file LICENSE
  • Last published: 2026-01-18