nonmem2R0.2.5 package

Loading NONMEM Output Files with Functions for Visual Predictive Checks (VPC) and Goodness of Fit (GOF) Plots

add.caption

Add caption to ggplot object

basic.eta.GOF

Histogram and/or QQ-norm GOF for ETA's

basic.GOF4

Basic 4- and 6-panel GOF

covload

Load the covariance matrix from a nonmem .cov output file.

covload.sub.table

Internal package function

do.cat.GOF

Y vs categorical X GOF-plot

do.individual.GOF

Individual GOF-plots

do.multi.GOF

Multiple Y vs single X GOF-plot

do.one.GOF

X-Y GOF-plot

eta.cov.GOF

Covariate and pairs ETA GOFs

extFormat

Internal package function

extload

Load final parameter values from a nonmem .ext output file.

extload.sub.table

Internal package function

extToTable

Compile parameter table suitable for reports

extTransform

Internal package function

get.GOF.dictionary

Get, set, and modify the global (or local) GOF parameters and GOF dict...

get.label

Labels for known NONMEM variables

get.model.path

Get and set model.path

grid.sim.internal1

Internal function

grid.sim.internal2

Internal function

grid.sim.internal3

Internal function

grid.sim

Combine fix grid and simulated grid based on multivariate normal distr...

histGOF

Histogram GOF

merge2GOF

Merging 2, 4, or 6 GOF's into one graph

modload

Show model file

position_scale

Position for scaling y

PositionScale

ggproto for position_scale

print.extToTable

Print function for compiled summary information of class extToTable

print.modload

Print function for loaded mod file

print.sumoR

Print function for compiled summary information of class sumoR

qqnormGOF

QQ-norm GOF

readVpc

Internal package function

stat_corr

Adding correlation to x-y plots

stat_denx

Density for x in x-y plot

stat_dnorm

Normal density

stat_hmean

Horizontal reference at mean

stat_hmedian

Horizontal reference at median

StatCorr

ggproto for stat_corr

StatDenx

ggproto for stat_denx

StatDnorm

ggproto for stat_dnorm

StatHmean

ggproto for stat_hmean

StatHmedian

ggproto for stat_hmedian

sumoR

Compile summary information for NONMEM model based on the lst file, ex...

sumoRU

Internal package function

test.grid.sim

Function for testing grid.sim and compare with rmvnorm

vpcfig

Visual Predictive Check (VPC) based on Perl-speaks-NONMEM (PsN) genera...

vpcfig2

Visual Predictive Check (VPC) based on Perl-speaks-NONMEM (PsN) genera...

vpcfig3

Visual Predictive Check (VPC) based on raw Perl-speaks-NONMEM (PsN) ge...

Loading NONMEM (NONlinear Mixed-Effect Modeling, <https://www.iconplc.com/solutions/technologies/nonmem/>) and PSN (Perl-speaks-NONMEM, <https://uupharmacometrics.github.io/PsN/>) output files to extract parameter estimates, provide visual predictive check (VPC) and goodness of fit (GOF) plots, and simulate with parameter uncertainty.

  • Maintainer: Magnus Astrand
  • License: Unlimited
  • Last published: 2024-03-11