Nucleome Imaging Toolbox
Barplot with Intervals for two or three bars beside
Barplot with Intervals
class.neighbours.folder
Class neighbourhood distribution
Classify DAPI
Classify DAPI
Classify DAPI
Count classes in classified image
Compute colors in classes distribution for folders
Compute colors in classes distribution
Compute distance to border of classes
Automatic DAPI mask segmentation for files
Automatic DAPI mask segmentation for folder
Mask DAPI in kernel
Detects spots for one file
Detects spots
Heatmap colors for n classes
Heatmap colors for 7 classes
Find all distances to next neighbour of all classes for folders
Plot barplot for classified images in a folder
Plot for colors in classes distribution for folders
Plots all distances to next neighbour of all classes for folders
Split RGB channels
Split channels into files and extracts size in microns
Split RGB images into channels and pixel size information
Split RGB images into channels and pixel size information
Find spots using information from two channels
Find spots using information from two channels for folder
Find spots using information from two channels
Test for colors in classes distribution for folders
Tools for 4D nucleome imaging. Quantitative analysis of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy. See Volker J. Schmid, Marion Cremer, Thomas Cremer (2017) <doi:10.1016/j.ymeth.2017.03.013>.
Useful links