Explain Gene Expression with Boolean Rules of Chromatin States
Estimate Effective Sample Size from Single-Cell RNA-seq Data
Human ATAC-seq data
Human metadata
Human peaks GRanges
Human RNA-seq data
Identifies ATAC-seq peaks surrounding each gene
Mouse ATAC-seq data
Mouse peaks GRanges
Mouse RNA-seq data
Predicts OCR-driven Boolean rules for a gene
Predicts OCR-driven Boolean rules for a gene
Infers Boolean rules among cis-regulatory regions using paired chromatin accessibility and gene expression data at bulk and single-cell levels. Links regulatory regions to target genes, providing insights into gene regulation mechanisms.