parents_haplotypes function

Generates data.frame with parents estimated haplotypes

parents_haplotypes(
  ...,
  group_names = NULL,
  map.function = "kosambi",
  ref_alt_alleles = FALSE
)

Arguments

• ...: objects of class sequence
• group_names: vector of characters defining the group names
• map.function: "kosambi" or "haldane" according to which was used to build the map
• ref_alt_alleles: TRUE to return parents haplotypes as reference and alternative ref_alt_alleles codification

Returns

data.frame with group ID (group), marker number (mk.number) and names (mk.names), position in centimorgan (dist) and parents haplotypes (P1_1, P1_2, P2_1, P2_2)

Examples

data("onemap_example_out")
twopts <- rf_2pts(onemap_example_out)
lg1 <- make_seq(twopts, 1:5)
lg1.map <- map(lg1)
parents_haplotypes(lg1.map)

Author(s)

Getulio Caixeta Ferreira, getulio.caifer@gmail.com

Cristiane Taniguti, chtaniguti@tamu.edu