write_onemap_raw function

Convert onemap object to onemap raw file

Converts onemap R object to onemap input file. The input file brings information about the mapping population: First line: cross type, it can be "outcrossing", "f2 intercross", "f2 backcross", "ri self" or "ri sib". Second line: number of individuals, number of markers, presence (1) or absence (0) of chromossome and position of the markers, and number of phenotypes mesured. Third line: Individuals/sample names; Followed lines: marker name, marker type and genotypes. One line for each marker. Final lines: chromossome, position and phenotypes informations. See more about input file format at vignettes.

write_onemap_raw(onemap.obj = NULL, file.name = NULL)

Arguments

• onemap.obj: object of class onemap
• file.name: a character for the onemap raw file name. Default is "out.raw"

Returns

a onemap input file

Examples

data(onemap_example_out)
write_onemap_raw(onemap_example_out, file.name = paste0(tempfile(), ".raw"))

See Also

read_onemap for a description of the output object of class onemap.

Author(s)

Cristiane Taniguti, chtaniguti@tamu.edu