Lightweight Reproducible Reporting
Set default remote location
Develop an orderly report
Run a batch of reports.
Pack and run orderly "bundles"
Pack and import bundles with remotes
Orderly cleanup
Commit a generated report
Retrieve orderly config object.
Connect to orderly databases
Deduplicate an orderly archive
Set up an orderly example
Print the dependency tree for a given report using orderly log
Given a tree return a list of reports to be re-run (and the order that...
Return info about a report which has been run
Initialise an orderly store
Find most recent report
List orderly reports
List draft and archived reports
List reports with only local metadata
Orderly logging and diagnostic messages
Migrate an orderly archive
Create new report
Download dependent reports
Rebuild the report database
Get a remote
Orderly remote at a different path
Get status of remote queue.
Run a report
Information on current orderly run
Run a report on a remote server
Search for orderly reports matching criteria
Prepare a directory for orderly to use
Add a resource to orderly.yml
Order, create and store reports from R. By defining a lightweight interface around the inputs and outputs of an analysis, a lot of the repetitive work for reproducible research can be automated. We define a simple format for organising and describing work that facilitates collaborative reproducible research and acknowledges that all analyses are run multiple times over their lifespans.
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