Lightweight Reproducible Reporting
Update a gitignore file
Declare orderly artefacts
Clean up source directory
Declare a dependency
Describe the current packet
Show an example file
Copy a simple orderly example
Compare the metadata and contents of two packets.
Print the details of a packet comparison.
Set configuration options
Read configuration
Copy files from a packet
Compute a hash
Initialise an orderly repository
Set search options for interactive use
List source reports
Add a new location
Fetch metadata from a location
List known pack locations
Pull one or more packets from a location
Push tree to location
Remove a location
Rename a location
Extract metadata from orderly packets
Declare orderly resources
Read outpack metadata json file
Read outpack metadata
Migrate orderly source code
Create a new report
Declare orderly parameters
Parse the orderly entrypoint script
Add metadata from plugin
Fetch plugin context
Register an orderly plugin
Prune orphan packet metadata
Explain a query
Construct outpack query
Information about currently running report
Run a report
Packet search options
Query orderly's database
Copy shared resources into a packet directory
Enable orderly strict mode
Validate unpacked packets.
Deprecated functions in orderly. These functions still work (**for now...
Distributed reproducible computing framework, adopting ideas from git, docker and other software. By defining a lightweight interface around the inputs and outputs of an analysis, a lot of the repetitive work for reproducible research can be automated. We define a simple format for organising and describing work that facilitates collaborative reproducible research and acknowledges that all analyses are run multiple times over their lifespans.