Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output
Class "afni"
Class "anlz"
Operations for Objects in the ANALYZE and NIfTI classes
Constructor for Analyze
as.anlz
as.nifti
Extract or Replace NIfTI Audit Trail
Facilitate the Creation and Modification of Audit Trails
Extract Image Attribute aux_file
Extract Image Attribute bitpix
Bitwise Conversion Subroutines
Merge Two NIfTI or ANALYZE Volumes
Set Minimum/Maximum Values for NIfTI data
Extract Image Attribute cal_max
Extract Image Attribute cal_min
Extract Image Attribute cal_units
Force an Object to Belong to the ANALYZE or NIfTI Class
Extract Image Attribute compressed
Convert AFNI data codes
Convert ANALYZE Codes
Convert NIfTI Codes
Extract Image Attribute data_type
Extract Image Attribute datatype
Extract Image Attribute db_name
Extract Image Attribute descrip
Extract Image Attribute dim_
Extract Image Attribute dim_info
Extract Image Attribute dim_un0
Drop Image Dimension
Extract Image Attribute exp_date
Extract Image Attribute exp_time
Extract Image Attribute extender
Extract Image Attribute extents
Extract Image Attribute field_skip
Extract Image Attribute funused1
Extract Image Attribute funused2
Extract Image Attribute funused3
Extract Image Attribute generated
Extract Image Attribute glmax
Extract Image Attribute glmin
Extract Image Attribute hist_un0
Extract Image Attribute hkey_un0
Hot Metal Color Table
Methods for Function `image'
Extract Image Attribute .Data
Gets Image Length in Each Dimension
integerTranslation
Extract Image Attribute intent_code
Extract Image Attribute intent_name
Extract Image Attribute intent_p1
Extract Image Attribute intent_p2
Extract Image Attribute intent_p3
"internalImage" class
check object
check object
check object
Extract Image Attribute magic
Dimension Accessor Functions
Class "nifti"
Constructor for NIfTI
Methods for Function [<- in Package 'base'
Class "niftiAuditTrail"
Class "niftiExtension"
Class "niftiExtensionSection"
"niftiImage" class
Operations for NIfTI Objects
Convert RNifti niftiImage to oro.nifti nifti object
Extract Image Attribute omax
Extract Image Attribute omin
Creates the onefile Specification for NIfTI
Extract Image Attribute orient
Extract NIfTI 3D Image Orientation
Extract Image Attribute origin
Convert oro.nifti nifti to RNifti niftiImage object
Methods for Function orthographic' in Package dcemriS4'
Methods for Function overlay
Extract Image Attribute patient_id
Transform array with orthogonal permutation matrix
Extract Image Attribute pixdim
Extract Image Attribute qform_code
Extract Image Attribute qoffset_x
Extract Image Attribute qoffset_y
Extract Image Attribute qoffset_z
Extract Image Attribute quatern_b
Extract Image Attribute quatern_c
Extract Image Attribute quatern_d
Convert Quaternion into a Rotation Matrix
readAFNI
readANALYZE
readNIfTI
Extract Image Attribute regular
Remove File Extensions Around the NIfTI/ANALYZE Formats
Reorient Image using NIfTI header
Extract Image Attribute scannum
Extract Image Attribute scl_inter
Extract Image Attribute scl_slope
Extract Image Attribute session_error
Extract Image Attribute sform_code
Extract Image Attribute sizeof_hdr
Methods for Function `slice'
Extract Image Attribute slice_code
Extract Image Attribute slice_duration
Extract Image Attribute slice_end
Methods for Function slice_overlay
Extract Image Attribute slice_start
Extract Image Attribute smax
Extract Image Attribute smin
Extract Image Attribute srow_x
Extract Image Attribute srow_y
Extract Image Attribute srow_z
Extract Image Attribute start_field
Tim's Useful Color Table
Extract Image Attribute toffset
Translate Voxel Coordinates
Extract Image Attribute unused1
Extract Image Attribute verified
Extract Image Attribute views
Extract Image Attribute vols_added
Extract Image Attribute vox_offset
Extract Image Attribute vox_units
Gets Voxel Dimensions
Gets Voxel Resolution
writeAFNI
writeANALYZE
writeNIfTI
Extract Image Attribute xyzt_units
Change Intercept to 0 and Slope to 1 in NIfTI Object
Functions for the input/output and visualization of medical imaging data that follow either the 'ANALYZE', 'NIfTI' or 'AFNI' formats. This package is part of the Rigorous Analytics bundle.