Single-Cell RNA Sequencing Pseudo-Time Based Gene Regulatory Network Inference
Pseudotime based Expression Data Transformation
Bidirectional DTW Distance
DTW distance matrix for all genes
Get the list of sub-networks
Convert distance matrix to adjacency dataframe
Get module level networks
pGRN: creates gene regulatory network based on single cell pseudotime ...
Plot stationary network
Plot interactive network
Get network adjacency dataframe based on DTW method
Use Granger-causality Test to get gene-gene regulatory relationship
Sliding Window Average
Inference and visualize gene regulatory network based on single-cell RNA sequencing pseudo-time information.