Read, Manipulate and Visualize 'Pairwise mApping Format' Data
Coerce a data.frame or tibble into a pafr object
Extract the sizes of all sequences in a paf alignment
Generate a dot plot from a paf alignment
Remove secondary alignments from a pafr alignment
Number formatters for scales in base pairs
Highlight segments of a query or target genome in a dot plot
Plot the regions of one genome that are covered by alignments in a paf...
Plot synteny between a query and target sequence in a PAF alignment
Read genomic intervals in bed format
Read a genomic alignment in PAF format
A minimalistic ggplot2 theme designed for use with genome coverage plo...
Provides functions to read, process and visualize pairwise sequence alignments in the 'PAF' format used by 'minimap2' and other whole-genome aligners. 'minimap2' is described by Li H. (2018) <doi:10.1093/bioinformatics/bty191>.