Pam: Prediction Analysis for Microarrays
Prediction Analysis of Microarrays
A function to adaptive choose threshold scales, for use in pamr.train
A function to mean-adjust microarray data by batches
A function giving a table of true versus predicted values, from a near...
Compute confusin matrix from pamr survival fit
A function to cross-validate the nearest shrunken centroid classifier
A function to decorrelate (adjust) the feature matrix with respect to ...
A function to estimate false discovery rates for the nearest shrunken ...
A function to plot the genes that surive the thresholding from the nea...
A function that takes estimate class probabilities and produces a clas...
A function to list the genes that survive the thresholding, from the n...
A function to interactively define classes from a clustering tree
A function that interactively leads the user through a PAM analysis
A function to plot the shrunken class centroids, from the nearest shru...
A function to plot the cross-validated error curves from the nearest s...
A function to plot the cross-validated sample probabilities from the n...
A function to plot the FDR curve from the nearest shrunken centroid cl...
A function to plot the survival curves in each Kaplan Meier stratum
A function to plots Kaplan-Meier curves stratified by a group variable
A function giving prediction information, from a nearest shrunken cent...
A function giving prediction information for many threshold values, fr...
A function to assign observations to categories, based on their surviv...
A function giving a table of true versus predicted values, from a near...
A function to train a nearest shrunken centroid classifier
Some functions for sample classification in microarrays.